Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1972 ATGGGTCTTGATTCTCAGGCTCACAGCATGATATTCATCATTACCATATTGATATTCCTAACATTGCAAAATGCAGCAGGAAATGAAAATCAGATTGAGAAAATCTCAGGAATGGATGAGAATGACAACAAGCAAACTCCCATTGTGGAAAACTTCAGACTTTTGCTTGGACTCAACATGTTCAACACAAGAAGACCATGCTATAAGGTTGCTAACTCTGACTTTGAGTCCCTCTCACCTTCTCTGTCACCCAACACCGAAGCTGAGGCTCCGGTTCCGGCTCCGGAGCTGCATGTGCAACCTCATTCCTATCACCCACATAGGAACATGCCACTTCACAAGATTCTACAAAAAGATAGAGGCAGGGCAAAAAGAACAACACTAGTAGCTGTTGTAGTACCTGGTGGAGTTGCTACCTTAATTTGTGCACTTGGGTGTGTATGTGTTTGCAAGAAATTCAGAAATCAGAAAAGGAAACCCAATAGGACAATGCCACTCTTCAGTAAGAACGAAAGAACAGGAGGTACGTCTACGTACCAAAATCCATCAAGCAATGTGAGTTTAAACTCTGCCCCTGATCTGATTTATCTCACTTGTTTGAAACAAACTTGTGGAACACAAAATAGCAGCACTTCAAGCCATTGTTCACAACAACGCACAATTTATGAGAAGAAAGTGTTGCATCGAGAAGAATATGACAAGGTTAGCACTAGTAGTTCTTCCACAAAGGAAATTCTCTCTGTCCATGAGGATTTGGAATATGATGGTGGTGGCAAAGCTTCCTCTGGAGAGAAAACTGTTCTTCAAGGATGCCATAGCCTTTCATCAGACAGCGAAAGTTTTCATTCGTGTTTTGATACACATTCATCAATAAGTGAAACAGAAACACTGTCTCTCTCTCCTAGAAATTCAATCTCTTCAACAAATCAATTTCCTTGCTCCCCTCAGAATTCAACTACAAAGGTAAAACCAAACCAGTCACAATCACCATGCATTCCAAAACAGGAAGAGCAAAAGAAGCTTGAAACTTGTCAACCTAGCATTCCTCCCCCACCGTGTCCACCTCCATTTTTGAAAGGAAACATTAACAGTGCAATCAAAACTCCACCTTCTCCACTTCCTCAAGGTAAGGGTGGAAGTTCTCCACTGCCAAAACTCAAACCACTTCACTGGGACAAAGTAAGAGCCACGCCAGATCGAACAATGGTGTGGGATAAGCTACGAACAAGCTCATTTGAGTTGGACGAGGTAATGATCGAGTCACTCTTTGGCTACAATTTACAAAACTCAATGAAGAACGACGAAACCAAGAGCAAAACCCCGTCTCCAAGCAAGCATGTACTTGAGCCAAAACGGTTTCAAAACATAGCAATTCTCTCGAAAGCTCTAAATACCACAGCTGAACAAATATGCGAAGCCCTGATACTAGGGAAAGGCTTGTCTTTGGAACAACTAGAGGCACTGGTGAAAATGGTACCCACGAAGGAAGAAGAGGCTAAGCTCTTAAGCTACAAAGCAGATATCAATGAACTAGGGTCTGCTGAAAAGTTTGTGAGAGCAATGCTTAGCGTACCATTTGCCTTTCAACGAGTGGAAGCCATGCTTTACAGAGAGACTTTCGAAGATGAAGTAGTTCACCTCAGAAACTCTTTTTCAACGCTAGAGGAAGCGTGCAAGGAACTAAGGTCAAGCAGGTTCTTCTTGAAATTGCTCGAAGCAGTGCTCAAAACAGGAAATCGCATGAACGTTGGAACAATCAGGGGAGGTGCCAGAGCCTTCAAACTCGACGCCCTTCTGAAGCTAGCTGATGTTAAAGGAACAGATGGTAAAACCACCTTGCTCCATTTCTTTGTTCAGGAGATTGTTCGCTCAGAAGGAATCAAAGCTTCAGAGAGGATCATGGGGAAAACAAGTGAAAACAGAACAGAAGAAGAGAAGGAAGAAGATTATAAGAGAATAGGACTAGAACTTGTTTCTGGTCTGAGTGCCGAGTTATGCAATGTTAAGAAGACAGCTACAATTGACTTGGATGTTCTTGCAAGTTCCATCTCAAACCTATCAAGTGGAGTGGCTAACATGGAGAACCTAGTAAAGGGTCTGTTGTGTGAGGATGAAAAGAGTGAGAGCTTTGTCATTTCTATGAAGTGGTTTTTGAATTATGCAGAGAGAAAGGTACGGGACTTGCAAGGAGATGAAGGGAGAGTCATGGCTCGTGTCAAAGAAATAACTGAGTATTTTCATGGGGATGTGAGTAAAGAAGAGTCGAATCCACTTCGAATCTTTGTGATCGTGAGGGACTTTCTGGAGATGGTAGATAACGTTTGCAATGAGCTTAAAAGGTCTACGAAATCACCTCGCACCATTCGGATAGAGTAG 2376 0.4251 MGLDSQAHSMIFIITILIFLTLQNAAGNENQIEKISGMDENDNKQTPIVENFRLLLGLNMFNTRRPCYKVANSDFESLSPSLSPNTEAEAPVPAPELHVQPHSYHPHRNMPLHKILQKDRGRAKRTTLVAVVVPGGVATLICALGCVCVCKKFRNQKRKPNRTMPLFSKNERTGGTSTYQNPSSNVSLNSAPDLIYLTCLKQTCGTQNSSTSSHCSQQRTIYEKKVLHREEYDKVSTSSSSTKEILSVHEDLEYDGGGKASSGEKTVLQGCHSLSSDSESFHSCFDTHSSISETETLSLSPRNSISSTNQFPCSPQNSTTKVKPNQSQSPCIPKQEEQKKLETCQPSIPPPPCPPPFLKGNINSAIKTPPSPLPQGKGGSSPLPKLKPLHWDKVRATPDRTMVWDKLRTSSFELDEVMIESLFGYNLQNSMKNDETKSKTPSPSKHVLEPKRFQNIAILSKALNTTAEQICEALILGKGLSLEQLEALVKMVPTKEEEAKLLSYKADINELGSAEKFVRAMLSVPFAFQRVEAMLYRETFEDEVVHLRNSFSTLEEACKELRSSRFFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGTDGKTTLLHFFVQEIVRSEGIKASERIMGKTSENRTEEEKEEDYKRIGLELVSGLSAELCNVKKTATIDLDVLASSISNLSSGVANMENLVKGLLCEDEKSESFVISMKWFLNYAERKVRDLQGDEGRVMARVKEITEYFHGDVSKEESNPLRIFVIVRDFLEMVDNVCNELKRSTKSPRTIRIE* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1972 791 Gene3D Formin, FH2 domain 398 788 IPR042201 -
Gso19g1972 791 SUPERFAMILY Formin homology 2 domain (FH2 domain) 349 783 - -
Gso19g1972 791 MobiDBLite consensus disorder prediction 367 387 - -
Gso19g1972 791 MobiDBLite consensus disorder prediction 161 184 - -
Gso19g1972 791 ProSiteProfiles Formin homology-2 (FH2) domain profile. 376 791 IPR015425 -
Gso19g1972 791 MobiDBLite consensus disorder prediction 295 336 - -
Gso19g1972 791 PANTHER FORMIN-RELATED 23 779 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Gso19g1972 791 SMART it6_source 376 786 IPR015425 -
Gso19g1972 791 Pfam Formin Homology 2 Domain 382 772 IPR015425 -
Gso19g1972 791 Coils Coil 788 791 - -
Gso19g1972 791 MobiDBLite consensus disorder prediction 295 334 - -
Gso19g1972 791 PANTHER FORMIN-LIKE PROTEIN 23 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1972 Gso-Chr19 48365130 48368729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1972 367 779 FH2 protein (formin) Gene Family AT3G05470 71.596 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1972 - - gmx:100805407 1496.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1972 19 48365130 48368729 Gso19g1972 19 48365130 48368729 ECH
Gso19g1972 19 48365130 48368729 Gso3g2009 3 45539329 45542866 GST
Gso19g1972 19 48365130 48368729 Gso10g1390 10 40315127 40319853 PCT