Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1956 ATGAGGAAGGCCCGGGTCCATAACAAAAACCCTAGCATGCATAGTTTAAATTTGAGGTATAGCATTGACAGAAGTGTGGTGCTCGAAGAAGTCCCATTCATTGCACTGATAGCAGCGATGGGGATCGATCTTAAGGCTGGGGGTAAGAGCAAAAAGACCAAAAGAACAGCACCAAAGTCCAATGACATCTACCTCAAATTACTTGTCAAGCTTTATCGATTCCTTGTTCGAAGGACAGACAGCAATTTCAATGCTGTGATACTCAAGCGCTTGTTCATGAGCAAGGTTAACAAGCCTCCAATTTCTTTGTCAAGGTTAATTAAGTATACGAAGGGGAAGGAGGATAAAATTGCTGTAGTAGTGGGGACTGTAACTGATGATATCAGAGTATATGAAGTTCCAGCATTGAAAATTACAGCACTCAAGTTTACAGAGAGAGCACGTGCAAGAATAGAAAAGGCTGGCGGTGAATGCTTGACATTTGATCAGCTTGCCCTTAGGGCTCCTTTGGGACAGAATACGGTCCTTCTTAGAGGCCCCAAGAATGCTCGGGAAGCTGTGAAACACTTTGGTCCTGCTCCTGGTGTGCCACACAGCCATACCAAGCCCTATGTACGAGCAAAGGGAAGGAAGTTCGAGAGGGCTAGAGGAAGGAGGAACAGCAGAGGATTTAGAGTTTAA 681 0.4493 MRKARVHNKNPSMHSLNLRYSIDRSVVLEEVPFIALIAAMGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNKPPISLSRLIKYTKGKEDKIAVVVGTVTDDIRVYEVPALKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGRRNSRGFRV* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1956 226 PANTHER 60S RIBOSOMAL PROTEIN L18 40 225 IPR000039 GO:0003735|GO:0005840|GO:0006412
Gso19g1956 226 Pfam Ribosomal protein 60S L18 and 50S L18e 41 226 IPR021131 -
Gso19g1956 226 SUPERFAMILY Ribosomal proteins L15p and L18e 59 178 IPR036227 -
Gso19g1956 226 Gene3D - 40 226 - -
Gso19g1956 226 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 40 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1956 Gso-Chr19 48232011 48233852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1956 42 226 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 77.957 2.60e-103 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1956 K02883 - gmx:100813255 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1956 19 48232011 48233852 Gso19g1956 19 48232011 48233852 ECH
Gso19g1956 19 48232011 48233852 Gso3g1993 3 45407984 45410134 GST
Gso19g1956 19 48232011 48233852 Gso10g1379 10 40201341 40203369 PCT