Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1950 ATGGGGGGAGATGCACAGAAGAGAAACGTCATCATTGGCGTCTCTACTTTCTTGTTGGTGGCCATGGTGGTAGCAGTCACAGTCAATGTCAACTTCAATAACAAGGGATCAAGCAGTGATTCAAAGGAAGAAAGCAAATCCCATGTAGCTTCCTCGATGAAGGCCGTGAAAACCCTTTGTGCACCCACCGATTACAAGAAGGAATGCGAGGACAATCTTATTGAACATGCCAGTAACATCACCGACCCACGGGAACTCATCAAAATCGCATTCCACGTGACCATCTCCAAAATCGGCGAAGGACTTGAGAAGACACAACTCATGCATGAGGTCGAGAATGACCCTATAACCAAGGAGGCACTCGACACGTGCAAGCAACTCATGAACCTCTCCATCGGGGAGTTCACGAGGTCACTCGACAAGTTCGCCAAGTTTGACCTGAACAACCTTGACAACATCCTCACAAGTTTGAAGGTTTGGCTCAGCGGTGCAATCACGTACCAAGAAACATGTTTAGATGCTTTCGAGAACACAACCACCGATGCTGGTCAAAAAATGCAGAAGCTCTTGCAAACTGCCATGCACATGAGTAGCAATGGCCTCTCTATCATCAACGAACTGTCAAAAACTCTCTCGGAAATGCACGTTAACAGACCTGGCCGTCGACGCCTTTTGAACAACGTTGATGATTTACCAGTTCTTGGCCACGACTTTGACCTTCCCGAATGGGTTGATGATCGCGTTGGTGTTCGCAAACTCCTACGTATGACTGGACGGAAACGCATGGCGCATGTGGTTGTTGCAAAGGATGGCAGTGGAAATTTCTCGACCATCAATGAAGCTTTGAAATATGTGCCCAAGAAAAACCTAAGGCCATTCGTTATCTATGTCAAGGAAGGAGTTTACAACGAGTACGTCGAGGTTTCCAAAAATATGACCCATGTTGTTATGATTGGTGATGGTGGTAAGAAGTCAAGGATCACTGGTAGCAAAAACTTCATCGATGGGGTTGGGACCTACAGAACCGCCAGTGCTGCCATTCTAGGAGATTTCTTCGTTGGCATAGGTATGGGGTTTGAGAACTCAGCTGGTGCTGAAAAACATCAAGCAGTGGCCTTGAGGGTTCAAGCTGACAGGTCCATCTTTTACAAATGTCGAATGGATGGGTACCAGGACACACTCTACGCACACACCATGCGTCAATTCTACCGTGATTGCATCATTTCAGGTACCATCGACTTTGTCTTTGGTGATGCAGTGGCTGTTCTCCAAAATTGCACTTTCGTGGTGCGAAAACCATTGGAAAACCAACAATGCATTGTGACTGCACAAGGCAGAAAAGAGAGGAACCAACCATCAGGATTAGTCATCCATGGAGGAAGCATTGTGTCAGACCCCACGTACTACCCAGTTAGATTCGACAACAAAGCTTACTTGGCACGTCCATGGAAGAATTTCTCAAGGACCATCTTCATGGACTCCTACATTGGTGATTTGATCACACCTGATGGTTACATGCCATGGCAAACATTGGAGGGTTTTAGTGGAATGGATACTTGTTTCTACGCTGAGTTCAACAACCGTGGCCCTGGTTCAGACAAAACCAAGCGTGTGAAGTGGGAAGGAGTTAAGACCCTTGATTCAGATGGAATAACAAACTTCTTGCCATCCATGTTTTTCCATGGAGATGACTGGATTAGGGTCACTAGGATTCCTTACTACTCTGGCCAGGTCTCCCACACTAACTGA 1749 0.4654 MGGDAQKRNVIIGVSTFLLVAMVVAVTVNVNFNNKGSSSDSKEESKSHVASSMKAVKTLCAPTDYKKECEDNLIEHASNITDPRELIKIAFHVTISKIGEGLEKTQLMHEVENDPITKEALDTCKQLMNLSIGEFTRSLDKFAKFDLNNLDNILTSLKVWLSGAITYQETCLDAFENTTTDAGQKMQKLLQTAMHMSSNGLSIINELSKTLSEMHVNRPGRRRLLNNVDDLPVLGHDFDLPEWVDDRVGVRKLLRMTGRKRMAHVVVAKDGSGNFSTINEALKYVPKKNLRPFVIYVKEGVYNEYVEVSKNMTHVVMIGDGGKKSRITGSKNFIDGVGTYRTASAAILGDFFVGIGMGFENSAGAEKHQAVALRVQADRSIFYKCRMDGYQDTLYAHTMRQFYRDCIISGTIDFVFGDAVAVLQNCTFVVRKPLENQQCIVTAQGRKERNQPSGLVIHGGSIVSDPTYYPVRFDNKAYLARPWKNFSRTIFMDSYIGDLITPDGYMPWQTLEGFSGMDTCFYAEFNNRGPGSDKTKRVKWEGVKTLDSDGITNFLPSMFFHGDDWIRVTRIPYYSGQVSHTN* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1950 582 PANTHER PECTINESTERASE 9 579 - -
Gso19g1950 582 PANTHER PECTINESTERASE 9 579 - -
Gso19g1950 582 SMART PMEI_2 51 203 IPR006501 GO:0004857
Gso19g1950 582 Pfam Pectinesterase 264 563 IPR000070 GO:0030599|GO:0042545
Gso19g1950 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 208 IPR035513 -
Gso19g1950 582 Pfam Plant invertase/pectin methylesterase inhibitor 55 203 IPR006501 GO:0004857
Gso19g1950 582 ProSitePatterns Pectinesterase signature 1. 289 308 IPR018040 -
Gso19g1950 582 SUPERFAMILY Pectin lyase-like 264 575 IPR011050 -
Gso19g1950 582 TIGRFAM PME_inhib: pectinesterase inhibitor domain 47 207 IPR006501 GO:0004857
Gso19g1950 582 Gene3D - 261 579 IPR012334 -
Gso19g1950 582 CDD PMEI-like_3 58 209 - -
Gso19g1950 582 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Gso19g1950 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 209 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1950 Gso-Chr19 48195724 48198542 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1950 6 576 Carbohydrate Esterase AT3G05610 48.342 0.0 589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1950 19 48195724 48198542 Gso3g1988 3 45380377 45382782 GST
Gso19g1950 19 48195724 48198542 Gso10g1378 10 40194034 40196920 PCT