Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1949 ATGACCTTCATGGCTATTTCCGAGCTATCCTTGAGCTTATTCATGGTCTATGTTCTAAGCATTTTCTCCAACTTTGCGTCTCTTGCATCATCCTCTTCCTCCACCGATACCATATGCAACCTTACACCTTATCCAACATTTTGTGAATCCAATTCACCTTCTAGTAACAGCCAAGGCGACATACACGAATATGGCCGGTTTTTTGCAGGCAAATCCTTGTCATCGTCGAAGAAGTTCGTCGCATTAGTCTCTAAATACCTTTATAAATCTCCATCCAATTTCTCAAACTCCACAATTCTTGCTCTTCAAGATTGTCACCTTCTAGGTGACCTGAATAAGGACTTTTGGCATAAGACCCAACAAAGCATAAATTCCACAAACACCCTCAGTAGCTCAGAAGGTGAAAAATTGCACAATTTGCTTAGTGCTACATTGACCAACCACGACACGTGCTTAAACAGCCTTCATGAAACTACTTCAAGCCCTGACAATGACCTACTAACCCATCTTTCAAATGGAACCAAGTTTTATAGCATATCTCTTGCAATCTTCAAGCGGGGATGGGTGAACAATACTGCAAATAAGGAGAGAAAACTTGCAGAAAGAAATTATCACATGTGGGAACAGAAGCTGTACGAGATTATCAGAATAAGAGGAAGAAAATTGTTTCAGTTTGCTCCAGACAACGTTGTTGTGAGCCAAAGGGTGGTGGTGAACCCAGATGGTTCTGGAAACTTCACAACTATCAATGATGCAGTGGTTGCAGCTCCAAATAACACCGGGGTTGGAAATGGGTTTTTCGTGATTCACGTGGTGGCTGGAGTGTATGAAGAATATGTTTCTATTCCCAAAAACAAGCAGTACCTGATGATGATAGGAGATGGAATTAACCAAACCATAATCACCGGTAATCGCAGCGTGGTTGATGGTTGGACTACCTTCAATTCTGCAACATTTGCCGTGGTTGCACAAGGTTTTGTGGCAATAAACATAACATTTCGCAACACAGCTGGAGCAATCAAGCACCAAGCAGTAGCCCTCAGAAGCGGTGCAGACCTATCTGCATTTTACAATTGTAGCTTCGAAGGGTACCAAGACACCTTATACACTCATTCCCTTAGACAATTTTACAGAAACTGTGACATTTATGGCACGGTGGACTTCATATTTGGTAACGCAGCAGTTGTATTACAAGACTGTAACATCTACCCAAGACTCCCATTGCAAAATCAATTCAATGCAATTACCGCACAGGGAAGGACTGACATTAACCAAAACACCGGCACCTCCATACACAATTGTAGCATAACCGCCGCGAGTGACTTGGCCACTAGCAATGGCACCACGAAAACGTACCTAGGAAGACCCTGGAAGCAATATTCAAGAACACTTTATATGCAGTCTTTCATGGACGACGGTTTGGTCGATCCAGAGGGGTGGAAAGCTTGGTCTGGGGACTTTGCTTTGGACACACTTTATTATGCGGAATTTGATAATCAAGGGCCTGGATCTAACACTAGTAATAGGGTTACTTGGCCAGGGTACCATGTGATTAATGCCACAGATGCTGTCAATTTCACAGTTGCTAATTTCATAATAGGTGATGCTTGGCTGCCTGCGACTGGAGTACCTTACTATGCTGATTTACTCATCTGA 1656 0.4287 MTFMAISELSLSLFMVYVLSIFSNFASLASSSSSTDTICNLTPYPTFCESNSPSSNSQGDIHEYGRFFAGKSLSSSKKFVALVSKYLYKSPSNFSNSTILALQDCHLLGDLNKDFWHKTQQSINSTNTLSSSEGEKLHNLLSATLTNHDTCLNSLHETTSSPDNDLLTHLSNGTKFYSISLAIFKRGWVNNTANKERKLAERNYHMWEQKLYEIIRIRGRKLFQFAPDNVVVSQRVVVNPDGSGNFTTINDAVVAAPNNTGVGNGFFVIHVVAGVYEEYVSIPKNKQYLMMIGDGINQTIITGNRSVVDGWTTFNSATFAVVAQGFVAINITFRNTAGAIKHQAVALRSGADLSAFYNCSFEGYQDTLYTHSLRQFYRNCDIYGTVDFIFGNAAVVLQDCNIYPRLPLQNQFNAITAQGRTDINQNTGTSIHNCSITAASDLATSNGTTKTYLGRPWKQYSRTLYMQSFMDDGLVDPEGWKAWSGDFALDTLYYAEFDNQGPGSNTSNRVTWPGYHVINATDAVNFTVANFIIGDAWLPATGVPYYADLLI* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1949 551 SUPERFAMILY Pectin lyase-like 232 547 IPR011050 -
Gso19g1949 551 Coils Coil 190 210 - -
Gso19g1949 551 Pfam Plant invertase/pectin methylesterase inhibitor 36 183 IPR006501 GO:0004857
Gso19g1949 551 CDD PMEI-like_3 37 188 - -
Gso19g1949 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 186 IPR035513 -
Gso19g1949 551 PANTHER PECTINESTERASE 15 548 - -
Gso19g1949 551 Gene3D - 229 549 IPR012334 -
Gso19g1949 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 186 IPR035513 -
Gso19g1949 551 PANTHER PECTINESTERASE 15 548 - -
Gso19g1949 551 ProSitePatterns Pectinesterase signature 2. 382 391 IPR033131 -
Gso19g1949 551 Pfam Pectinesterase 236 535 IPR000070 GO:0030599|GO:0042545
Gso19g1949 551 SMART PMEI_2 30 183 IPR006501 GO:0004857
Gso19g1949 551 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1949 Gso-Chr19 48191788 48194514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1949 9 550 Carbohydrate Esterase AT4G02330 55.459 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1949 K01051 - gmx:100801141 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1949 19 48191788 48194514 Gso10g1377 10 40190149 40192749 PCT