Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1941 ATGATAGAACTATCGAGGGCGAAGTCAGCGCCGGTTCCATTGGGGACTCTGATTGGTCGTGAGCTTCGAAATGGAAAAGTTGAAAAACCTTTTGTGAAGTATGGACAAGCTGGATTGGCCAAGAAAGGAGAAGATTACTTTCTGATCAAGACAGATTGCCTCAGGGTTCCCGGGGATGCATCAACGGCGTTTTCTGTCTTTGCGGTCTTTGATGGGCATAACGGTATATCAGCTGCTATTTTTGCGAAGGAAAACTTGCTAAGTAATGTTTTGAGTGCAATACCTCAAGATATTAGCAGGGATGCTTGGCTTCAGGCTCTTCCTCGTGCTCTGGTTGTTGGTTTTGTGAAGACTGACATAGAGTTTCAGCAAAAGGGGGAAACTTCTGGAACAACAGCTACATTTGTTTTGGTTGATGGATGGACTATCACTGTTGCATCTGTGGGAGATTCCCGCTGCATATTAGATACTCAGGGAGGTGTTGTTTCTCTCTTGACAGTTGATCACAGGCTGGAAGAGAATGCAGAAGAGAGGGAGCGCGTTACTGCCAGCGGTGGTGAAGTAGGAAGACTCAATGTATTTGGAGGCAATGAGGTTGGGCCTCTTCGCTGCTGGCCAGGTGGATTGTGCCTATCTAGATCTATAGGTGACACAGACGTGGGAGAATTTATTGTGCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGTGGAAGGCTTATTATAGCTTCTGATGGTATTTGGGATGCTTTATCATCTGATATGGCTGCTAAGTCTTGTCGGGGTCTACCTGCAGAGCTTGCTGCAAAACTAGTGGTTAAGGAAGCTCTAAGGTCAAGAGGCCTCAAGGATGATACAACTTGCCTTGTTGTAGATATTATTCCTTCGGACCTCCCTGTATTACCACCAATTCCAAGAAAGAAACATAATATGCTAACTTCGCTTCTATTTTTTGGAAAGAAATCTGAGAACTCTATGAACAAAGCTACCAATAAGCTTTCTGCAGTTGGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACAGAAAGGCTAGGTAAGGATTTCCCGCTTAACAAGAATTCTGGTATTTTCCGTTGTGCGGTTTGCCAAATGGACCAACCCCCTGGTGATGGTTTATCAATGAACTCTGGGCCTTTTTTCTCTCCTGCATCTAATCCATGGGAAGGCCCATTCCTCTGCACAAACTGTTGGAAGAAGAAGGATGCCATGGAAGGAAAAAAGCCTAGCAGACCCACCGTTACAGCATAA 1284 0.4486 MIELSRAKSAPVPLGTLIGRELRNGKVEKPFVKYGQAGLAKKGEDYFLIKTDCLRVPGDASTAFSVFAVFDGHNGISAAIFAKENLLSNVLSAIPQDISRDAWLQALPRALVVGFVKTDIEFQQKGETSGTTATFVLVDGWTITVASVGDSRCILDTQGGVVSLLTVDHRLEENAEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDLPVLPPIPRKKHNMLTSLLFFGKKSENSMNKATNKLSAVGVVEELFEEGSAMLTERLGKDFPLNKNSGIFRCAVCQMDQPPGDGLSMNSGPFFSPASNPWEGPFLCTNCWKKKDAMEGKKPSRPTVTA* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1941 427 SMART PP2C_SIG_2 48 295 IPR001932 -
Gso19g1941 427 Pfam Protein phosphatase 2C 61 278 IPR001932 -
Gso19g1941 427 Gene3D - 31 299 IPR036457 -
Gso19g1941 427 CDD PP2Cc 41 295 IPR001932 -
Gso19g1941 427 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 3 426 - -
Gso19g1941 427 PANTHER ALPHABET, ISOFORM E-RELATED 3 426 - -
Gso19g1941 427 SMART PP2C_4 21 293 IPR001932 -
Gso19g1941 427 ProSiteProfiles PPM-type phosphatase domain profile. 23 295 IPR001932 -
Gso19g1941 427 SUPERFAMILY PP2C-like 36 295 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1941 Gso-Chr19 48092601 48095725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1941 5 426 PP2C-type Phosphatase Gene Family AT1G09160 77.725 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1941 - - gmx:100807886 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1941 19 48092601 48095725 Gso19g1941 19 48092601 48095725 ECH
Gso19g1941 19 48092601 48095725 Gso3g1981 3 45308013 45311712 GST