Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1940 ATGGCAGCAGAACCAGTTTTAACCTTCTCTCTTGCTTCTGTGGTGAAAGATGTTCTTCAACAACATGGTGGCCGGTTGGACGTCAACTTGGCATCAAGAAAAGCTGAAGAAGCTTCCTTGAGAAGGTATGAAGCAGCTGGGTGGCTGCGGAAGACAGTTGGAGTTGTTGGAGGGAAAGACTTGCCGGCCGAGCCTTCTGAAGAAGACTTCAGGATTGGGTTGCGTAGTGGGATTATTCTATGCAATGTTCTTAACAAAATTCAACCTGGAGCAGTGTCCAAGGTAGTTGAAGGCCCCTGTGATTCTGTTATTATTCCTGATGGGGCAGCACTGTCTGTGTATCAATACTTTGAAAATGTAAGGAATTTTCTTGTGGCTGTGGAGGAAATGGGGCTTCCTTCCTTTGAAGCTTCTGATTTGGAACAGGGAGGAAAGTCTTCAAGGATAGTGAATTGTGTTTTAGCGCTCAAATCCCATGCTGAAAGGAAATTTGGAGGAGGAAATGGGTCGTCGAAATATAGCGGGGTTGCAAAGCCACCTACCACTGGTAAAACACTTTTGAGGAAAAACTCGGAACCATTTATGAAGTCTATGTGGACTATGCCATCAGGGGACAGAGATGGTTATATGAGTGATCCCGGGCATGATCTAAATGAAAGGGGTTCTGTTTCTTCCTTAAATTCACTAGTTCGTCAATATTTGTCTGACAAGAAACCAGAAGAAATTCCCACTGTAGTGGAATCCCTGCTTAGCAAAGTCATGGAGGAGTTTGAGCATCACATGCAAATCCGACAGGAAATGTGTAAAACAACTCAAGGAGATAAAGCACCGTCTGAAACAGAATGTTCAATTTCAGAAGCTGCTTCAATTAATGAAAGGATGGAAGAAAAGGAAGATGAACAGGACGAACAAGATGAACATGACTTACAAGATGAACAAAACATACAAGATAAGCAAGAGGAAAATTATGAAGAGAAGTACAACAAGCGTGAAGACTCAAGCCGCCAGATTTTGATTTTGAAGCAGCAAAACATTGTCGAAACACAAAATAGAAGCATCCAGGAATTGAAAAGCATCGTCCATCAAACAAAATTAGGGATGCAATTCATGCAAAATGAACATCAGAAAGAGATCATTAATCTAAGTAAGCACCTGCATAGCCTAGCTTCTGCTGCTTCAGGATATCATAAAGTTCTTGACGAAAACCGCAAGCTATACAATATAGTGCAGGATTTGAAAGGAAATATTAGGGTGTACTGTAGAGTTCGACCCTTCTTGGGTGGGCAACTGAGCCATTATAGCTCCGTCGGTAACGTGGAAGAGGGAAGTATCTCGATCATAACACCTTCCAAATACGGCAAAGAGGGGAAGAAAACATTTAATTTCAATAGAGTATTTGGTCCTTCTGCAACCCAAGGGGAAGTATTCGCAGACACACAACCTCTGATTCGTTCTGTTCTGGATGGTTACAATGTCTGCATATTTGCCTATGGTCAAACAGGATCAGGAAAAACATTCACTATGTCTGGACCAGATGATATTAACGAGGAAACTATAGGTGTCAACTACCGTGCGCTGAAAGATCTTTTCTATCTCTCAGAGCAGAGGAAAGACACCATTTCTTATGAAATCTCTGTTCAGATGCTTGAAATTTACAATGAGCAAGTCAGAGACCTACTTACTACAGATGGTGCTAAAAGATTAGAAATTCGTAACAGTTCTCATAATGGCATCAATGTGCCAGATGCCGACCTTGTTCCGGTTTCATGCACTTCTGATGTCATAAATTTGATGAACTTGGGACAGAAGAATCGTGCTGTTGGTTCTACTGCCATGAATGATCGTAGTAGTCGCTCTCACAGCTGCCTAACAGTTCATGTTCAAGGAAAGAACCTGACATCAGGAAGTACTATTCGTGGTAGTATGCATCTAGTTGACCTGGCAGGAAGTGAAAGAGCTGATAAAACTGAGGCCACAGGGGATAGAATGAAGGAGGCTCAACATATCAACAAGTCACTTTCTGCCTTGGGAGATGTCATTTCTTCCCTTGCCCAAAAGAATGCACATGTTCCCTACAGGAACAGCAAACTTACTCAGCTGCTTCAGGATTCTCTTGGAGGGCAAGCAAAGACTCTCATGTTTGTTCATATAAGTCCGGAGCCAGAAGCTCTTGGAGAAACACTTAGCACACTCAAATTCGCTGAACGAGTCTCCACTGTTGAACTCGGTGCTGCGCGAGTTAATAAAGATAACTCAGATGTGAAAGAGCTTAAAGAACAGATTGCTAGTTTGAAGGCAGCCTTAGCGAGAAAGGAGGGAGGAGAAGCAGAACACTTCCAACAATCTGCCAATAGTAGCAGTCATGAAATACCCAAATTGAAATCATATGCATCTTCTCCTCCTATGCAACGTAGTTTGATAGGTGGTGCCCGTAAGCTACCAAAAGATGATTCTAGTAGCCTGAATGGCCAGAAAAATGCTGCATCAAAGTTGAAAAGACGAAGCCTAGATCTCCATGACATGCGTAAGAATTCACCTCCGTGGCCACCCGTTAGAAGTCATAGAAAGGAGGATGACAAAGAATCAATTTCTGGGGATTGGGTTGATAAGATTTCGATAAACAGAAATGACAGCTTAACTAGTGATGATAGTCTCGTGGGGCAGTGGGAAACAGAAAGCAAACAATCTTCTCCAATGTTAAGTCCCACTTTTCTCTCAGAGCCTTCTAAAATATGCATGGACCACTCCTTGCATAGAAAGGATAACCAAGAATTGTTTGATATGGCCATCACAGATGAATCTGATGAGCTTGAGATTGCAACTAGTGATTCTTCAGAATCAGACTTGCATTGGCCAGCACATATACCTAAACCAATCACCGTTTCAAGCGGATTAGGCATTAAAGCAAGGAAGAAACCAATTAATCTCAGACCAACAAAGAGCCTAGAAGCCAGGAGCATGATCCCATCATTAATCCCCATTCCCGTGCCATCAAGGAAACAACCAACCCTAGTTACTCCAGCAAGAAAGACTCCTGGGTCTATTGATGTAAAGAGAAGGATTGGGAATGCCAAGTGA 3078 0.4253 MAAEPVLTFSLASVVKDVLQQHGGRLDVNLASRKAEEASLRRYEAAGWLRKTVGVVGGKDLPAEPSEEDFRIGLRSGIILCNVLNKIQPGAVSKVVEGPCDSVIIPDGAALSVYQYFENVRNFLVAVEEMGLPSFEASDLEQGGKSSRIVNCVLALKSHAERKFGGGNGSSKYSGVAKPPTTGKTLLRKNSEPFMKSMWTMPSGDRDGYMSDPGHDLNERGSVSSLNSLVRQYLSDKKPEEIPTVVESLLSKVMEEFEHHMQIRQEMCKTTQGDKAPSETECSISEAASINERMEEKEDEQDEQDEHDLQDEQNIQDKQEENYEEKYNKREDSSRQILILKQQNIVETQNRSIQELKSIVHQTKLGMQFMQNEHQKEIINLSKHLHSLASAASGYHKVLDENRKLYNIVQDLKGNIRVYCRVRPFLGGQLSHYSSVGNVEEGSISIITPSKYGKEGKKTFNFNRVFGPSATQGEVFADTQPLIRSVLDGYNVCIFAYGQTGSGKTFTMSGPDDINEETIGVNYRALKDLFYLSEQRKDTISYEISVQMLEIYNEQVRDLLTTDGAKRLEIRNSSHNGINVPDADLVPVSCTSDVINLMNLGQKNRAVGSTAMNDRSSRSHSCLTVHVQGKNLTSGSTIRGSMHLVDLAGSERADKTEATGDRMKEAQHINKSLSALGDVISSLAQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPEALGETLSTLKFAERVSTVELGAARVNKDNSDVKELKEQIASLKAALARKEGGEAEHFQQSANSSSHEIPKLKSYASSPPMQRSLIGGARKLPKDDSSSLNGQKNAASKLKRRSLDLHDMRKNSPPWPPVRSHRKEDDKESISGDWVDKISINRNDSLTSDDSLVGQWETESKQSSPMLSPTFLSEPSKICMDHSLHRKDNQELFDMAITDESDELEIATSDSSESDLHWPAHIPKPITVSSGLGIKARKKPINLRPTKSLEARSMIPSLIPIPVPSRKQPTLVTPARKTPGSIDVKRRIGNAK* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1940 1025 Pfam Calponin homology (CH) domain 42 161 IPR001715 GO:0005515
Gso19g1940 1025 SMART kinesin_4 413 748 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso19g1940 1025 Pfam Kinesin motor domain 421 739 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso19g1940 1025 Gene3D Kinesin motor domain 410 781 IPR036961 -
Gso19g1940 1025 SMART ch_5 41 159 IPR001715 GO:0005515
Gso19g1940 1025 Coils Coil 287 307 - -
Gso19g1940 1025 MobiDBLite consensus disorder prediction 311 330 - -
Gso19g1940 1025 SUPERFAMILY Calponin-homology domain, CH-domain 42 168 IPR036872 -
Gso19g1940 1025 PANTHER KINESIN-LIKE PROTEIN KLP-3 6 1010 - -
Gso19g1940 1025 ProSitePatterns Kinesin motor domain signature. 640 651 IPR019821 GO:0003777|GO:0005524|GO:0007018
Gso19g1940 1025 PANTHER KINESIN-LIKE PROTEIN KIN-14H 6 1010 - -
Gso19g1940 1025 Coils Coil 747 774 - -
Gso19g1940 1025 MobiDBLite consensus disorder prediction 296 310 - -
Gso19g1940 1025 MobiDBLite consensus disorder prediction 287 330 - -
Gso19g1940 1025 CDD KISc_C_terminal 413 742 - -
Gso19g1940 1025 MobiDBLite consensus disorder prediction 772 863 - -
Gso19g1940 1025 PRINTS Kinesin heavy chain signature 489 510 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso19g1940 1025 PRINTS Kinesin heavy chain signature 610 627 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso19g1940 1025 PRINTS Kinesin heavy chain signature 641 659 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso19g1940 1025 PRINTS Kinesin heavy chain signature 690 711 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso19g1940 1025 Coils Coil 309 329 - -
Gso19g1940 1025 ProSiteProfiles Kinesin motor domain profile. 415 740 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso19g1940 1025 MobiDBLite consensus disorder prediction 778 802 - -
Gso19g1940 1025 ProSiteProfiles Calponin homology (CH) domain profile. 39 161 IPR001715 GO:0005515
Gso19g1940 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 772 IPR027417 -
Gso19g1940 1025 Gene3D - 32 163 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1940 Gso-Chr19 48083008 48089057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1940 403 740 Calmodulin-binding Proteins AT5G65930 43.529 6.97e-79 280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1940 19 48083008 48089057 Gso19g1940 19 48083008 48089057 ECH
Gso19g1940 19 48083008 48089057 Gso3g1980 3 45298594 45305097 GST