Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1938 ATGATGGATCTGAAGGAATGGTCATCATCTTCTGAGGAATTGAATGTGAACAGGAAATGTTGCGCTGATTGCAAAACCACCAAGACCCCACTCTGGAGAGGAGGACCAGCTGGACCCAAGACTCTATGCAACGCTTGTGGAATTAGGTATCGGAAGAGAAGGGCATGTTGGAGGAAGGGAGAGTTGAAGAAACAGAAACAGAAACAGAAACAGAGGTGGAAGATGCTGGGGGAAGAGGAACAAGCGGCGGTGTGTTTGATGGCCCTGTCCTGTGGTTTTGTTTTCGCTTGA 291 0.4845 MMDLKEWSSSSEELNVNRKCCADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRACWRKGELKKQKQKQKQRWKMLGEEEQAAVCLMALSCGFVFA* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1938 96 ProSitePatterns GATA-type zinc finger domain. 21 46 IPR000679 GO:0006355|GO:0043565
Gso19g1938 96 ProSiteProfiles GATA-type zinc finger domain profile. 21 51 IPR000679 GO:0006355|GO:0043565
Gso19g1938 96 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 70 - -
Gso19g1938 96 Gene3D - 16 80 IPR013088 GO:0006355|GO:0008270
Gso19g1938 96 SMART GATA_3 15 69 IPR000679 GO:0006355|GO:0043565
Gso19g1938 96 Pfam GATA zinc finger 21 54 IPR000679 GO:0006355|GO:0043565
Gso19g1938 96 PANTHER OS01G0976800 PROTEIN 62 96 - -
Gso19g1938 96 PANTHER OS01G0976800 PROTEIN 7 68 - -
Gso19g1938 96 CDD ZnF_GATA 21 54 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1938 Gso-Chr19 48069696 48070470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1938 3 96 C2C2-Gata Transcription Factor Family AT5G49300 48.760 7.39e-27 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso19g1938 GATA 2.6e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1938 - - gmx:100806819 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1938 19 48069696 48070470 Gso19g1938 19 48069696 48070470 ECH
Gso17g0249 17 2265220 2266412 Gso19g1938 19 48069696 48070470 ECH