Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1930 ATGTCTAACACCAGCAACAATGTCGCTGGGGTCGACAACACGTTCAGAAGAAAATTTGATCGAGAAGAGTATCTAGAACGAGCACGGGAGCGCGAGAGACAGGAGGAGGAGGGTCGAGCGAAACCTAAAGCCAAAGGTCCTCCCGTGCAGAGGAAGCCCTTGAAACATAGAGATTATGAAGTGGACCTTGAATCCCGCTTGGGCAAGACTCAGGTTGTTACGCCGGTTGCACCACTAAGTCAGCAGGCTGGATACTACTGCTCAGTTTGTGAGTGTGTGGTGAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCCTTGGGCATGTCCATGCGAGTAGAACGTGCTTCTCTCCAACAGGTTCAGGAACGATTTGAAGTTCTTAAGAAGCGTAAAGATGTTGGCAGCTTCACAGAGCAAGATCTTGACGAGCGGATTTTAAAACAGCAGCAAGAGGAGGAAGAAAGAAAGCGACTGCGTCGAGAAAAGAAAAAAGAAAAGAAGGAGAAGGCAGTTGAAGAACCTGAAATTGATCCTGATGTTGCTGCCATGATGGGGTTTGGAGGTTTCCGGTCATCCAACAAGAAATGA 609 0.4713 MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKAKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFEVLKKRKDVGSFTEQDLDERILKQQQEEEERKRLRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFRSSNKK* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1930 202 MobiDBLite consensus disorder prediction 157 202 - -
Gso19g1930 202 Pfam Zinc-finger of C2H2 type 85 109 - -
Gso19g1930 202 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Gso19g1930 202 Coils Coil 148 180 - -
Gso19g1930 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 3 201 IPR040107 GO:0000398|GO:0005681
Gso19g1930 202 MobiDBLite consensus disorder prediction 20 44 - -
Gso19g1930 202 Gene3D Classic Zinc Finger 79 117 - -
Gso19g1930 202 SUPERFAMILY beta-beta-alpha zinc fingers 80 122 IPR036236 -
Gso19g1930 202 MobiDBLite consensus disorder prediction 20 55 - -
Gso19g1930 202 MobiDBLite consensus disorder prediction 157 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1930 Gso-Chr19 48003206 48006445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1930 4 147 C2H2 Transcription Factor Family AT3G05760 80.556 2.05e-84 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso19g1930 zf-C2H2_jaz 1.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1930 K12848 - gmx:100527057 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1930 19 48003206 48006445 Gso19g1930 19 48003206 48006445 ECH
Gso19g1930 19 48003206 48006445 Gso3g1970 3 45221402 45226371 GST