Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1924 ATGGAAGCAGTTTACAGGTTGAAACCTCTTTTGGATGTGGTTAGAGTTGGGAACGCTACCACTTCTGAGATGCGTCTTGAATCAACGGCTAATTGTTACCTGCAGCTAGAAGCTCCTCAACCTCAAGAGAATAATAATGTAACCGACTCATCATCAGATATGTCGGATCGGATAATCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATTGAATGCCAAAAGGTTGGAGCACCGCCAGAACTGGCATGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGCTCGCCGTGAGATAGGGGAGGGCCCTGAACTTGACCACTTCATGGAAACATTCTGCCAAGTTCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAACGAAGCGACTTTGTTTTTGGGTGACATGGAATCACAACTCAGCAACCTTTGTAATGAAACACTAACAAAGTCATCGGATAACAACAACCGCTCCGACGAGGTAGCTAGTGGGGCATCAGAAGAGGAATTAAGTTGTGGGGAGATGGAAGCATTTGAAGATAATGTATCTTCAGTAACTTGTCCAAGTGATCAAAGGCTTAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGGTTTGAGAAAGGAATTTCTGAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAGGATGGCACTCATGGGCTGGTGGAACACCCATCATAGATGGCCTTATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAATTACTGGTCTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCTACCGAGGACATGCGATTTGCCGTCATGGACGGATTAAGAGGCGGCGGTGGCGGCGGCATAGGAGGGCCTATGTTGTTTTAG 936 0.4551 MEAVYRLKPLLDVVRVGNATTSEMRLESTANCYLQLEAPQPQENNNVTDSSSDMSDRIIKIQIANHPLYPDLLSAYIECQKVGAPPELACLLEEIGRESHRMNARREIGEGPELDHFMETFCQVLHRYKEELSRPFNEATLFLGDMESQLSNLCNETLTKSSDNNNRSDEVASGASEEELSCGEMEAFEDNVSSVTCPSDQRLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDARMALMGWWNTHHRWPYPTEEEKVKLSEITGLDQKQINNWFINQRKRHWKPTEDMRFAVMDGLRGGGGGGIGGPMLF* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1924 311 Pfam ELK domain 202 223 IPR005539 GO:0003677
Gso19g1924 311 MobiDBLite consensus disorder prediction 157 176 - -
Gso19g1924 311 MobiDBLite consensus disorder prediction 157 171 - -
Gso19g1924 311 Pfam KNOX1 domain 59 100 IPR005540 GO:0003677|GO:0005634
Gso19g1924 311 ProSiteProfiles 'Homeobox' domain profile. 222 285 IPR001356 GO:0003677
Gso19g1924 311 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 18 296 - -
Gso19g1924 311 SMART ELK_2 202 223 IPR005539 GO:0003677
Gso19g1924 311 SMART KNOX2_2 104 155 IPR005541 GO:0003677|GO:0005634
Gso19g1924 311 Pfam Homeobox KN domain 242 281 IPR008422 GO:0003677|GO:0006355
Gso19g1924 311 ProSitePatterns 'Homeobox' domain signature. 260 283 IPR017970 GO:0000981|GO:0006355
Gso19g1924 311 SMART KNOX1_2 57 101 IPR005540 GO:0003677|GO:0005634
Gso19g1924 311 CDD homeodomain 225 285 IPR001356 GO:0003677
Gso19g1924 311 SMART HOX_1 224 289 IPR001356 GO:0003677
Gso19g1924 311 Pfam KNOX2 domain 108 154 IPR005541 GO:0003677|GO:0005634
Gso19g1924 311 ProSiteProfiles ELK domain profile. 202 222 IPR005539 GO:0003677
Gso19g1924 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 18 296 - -
Gso19g1924 311 SUPERFAMILY Homeodomain-like 224 294 IPR009057 -
Gso19g1924 311 Gene3D - 220 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1924 Gso-Chr19 47965953 47971698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1924 38 300 Homeobox Transcription Factor Family AT1G23380 52.045 1.52e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso19g1924 KNOX2 7.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1924 - - gmx:100803095 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1924 19 47965953 47971698 Gso19g1924 19 47965953 47971698 ECH
Gso19g1924 19 47965953 47971698 Gso3g1963 3 45171957 45178130 GST
Gso19g1924 19 47965953 47971698 Gso10g1346 10 39835085 39840316 PCT
Gso10g1346 10 39835085 39840316 Gso19g1924 19 47965953 47971698 PCT