Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1920 ATGGGTGCCGGTCTAGTTGCGTTCCTCTTAATGGTTCTTGTGCAATTGGTCTATGCAGTGATGAACATTACTTCAAAGCTTGCAATAGAATCTGGAATGAGCCCTCTTGTCCTTGTTGCTTATCGACAACTCTTTGCTACTGTGTCCATTGCTCCCTTTGCTTATTGGCTCGAGTGGAATACGCTTCCCAGGATTACACAGCGTCTTATGATTCAGATATTATTTTCGTCCCTGACCGGAGTTACAGGAAATCAGATGCTTTATTTTGTGGGGCTGAAATATTCATCCGCTACAATTGCATGTGCACTGACAAATTTGCTCCCAGCTTTCACTTTCATCCTTGCAGTTCTCTTCAGACAAGAGAATTTGGGAATCAAGAAGAGGGCTGGTCTAGCAAAGGTATTCGGGACAATATTGTGTGTGAGTGGAGCCTTGCTTTTGTCATTTTACCATGGAAAAACCATTGGTTTAGGCCAATCAAGTATTCACTGGAGATATGCTGAGAAAATGGAAGGAACTAGCTCTTCTGGCAAAGGAAACATGTTCCTAGGCCCTTTGGTCGTAATTCTTAGCACCCTTGTTTGGGCAGCATGGTTCATAATTCAAAAAGACATAAGCAAGACATTTCCAGCTCCTTACACGAGCACTGGCTTAATGTGTTTCATGGCAAGCTTTCAATGCGTGATCATTGCCGTGTGTGTCGACCACAGGGCCTCAGCTTGGTCACTCCACAATGCTATGAGACTTTCCTCTGCCCTTTATGCGGGAATATTTTGCACTGGATTAGCCTATTGCCTCATGTCGTGGACCATTGAGAGAAAAGGTCCTCTTTATGTCTCTGTATTTACCCCTTTGCAGCTTGTCCTCACTGCCATTTTGAGCTGGGCTTTGCTTCGGGAGAAATTATATGTTGGAACTGCCGTAGGGTCTCTCTTGATAGTTTTGGGACTCTATTCTGTTCTCTGGGGAAAGAGTGAAGAGGTGAATAAGGGAGACGGTATTGAAGAAGATGCAGTTAAAGAAGCAGTCAAGGATTCGAAGAATGACATGGAATTGCAATCATATGTGCCATCCAATGGTAATAATGGTCGTGTTATTGCATGA 1104 0.4375 MGAGLVAFLLMVLVQLVYAVMNITSKLAIESGMSPLVLVAYRQLFATVSIAPFAYWLEWNTLPRITQRLMIQILFSSLTGVTGNQMLYFVGLKYSSATIACALTNLLPAFTFILAVLFRQENLGIKKRAGLAKVFGTILCVSGALLLSFYHGKTIGLGQSSIHWRYAEKMEGTSSSGKGNMFLGPLVVILSTLVWAAWFIIQKDISKTFPAPYTSTGLMCFMASFQCVIIAVCVDHRASAWSLHNAMRLSSALYAGIFCTGLAYCLMSWTIERKGPLYVSVFTPLQLVLTAILSWALLREKLYVGTAVGSLLIVLGLYSVLWGKSEEVNKGDGIEEDAVKEAVKDSKNDMELQSYVPSNGNNGRVIA* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1920 367 Pfam EamA-like transporter family 8 148 IPR000620 GO:0016020|GO:0016021
Gso19g1920 367 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020|GO:0016021
Gso19g1920 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 325 - -
Gso19g1920 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 148 - -
Gso19g1920 367 PANTHER WAT1-RELATED PROTEIN 6 349 IPR030184 GO:0016021|GO:0022857
Gso19g1920 367 PANTHER WAT1-RELATED PROTEIN 6 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1920 Gso-Chr19 47903953 47907467 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1920 3 361 Nodulin-like Gene Family AT1G09380 58.402 1.33e-148 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1920 - - gmx:100798142 724.161