Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1914 ATGTCTGAGCGAACTGGTTCTGGTTCTGGTTCTGACAGGACGAAGAGAAGCAATACGAGTGGAGTTGAGCCACACGAGAGTCGGAGAAGGAAAGAAGAGAACCTGATCGGCGTCAGAAGACAAAAACGTGCCCGTTTACGCTATCCGGCTTTGACAGCTATTCCCAAGTTGCTACAATCTCTATGTTCTGAGTACCCTGCCTTAGAATCGCAGATAACTTCTCACTTAAATACTCTGTTAGCACTTGATGATCAAATCCCTCTGATTGATGATGTCCTTAAGGATGTTGTTCTCCCTCGCTTTGTCAAGTTCTTGGATGACGAGAAAGAACCCCAATTTCAGTTAGAAGCTCTATGGGTTCTAACCAATTTTGCGGAAGCATCATCCAAACACACAAAAGTTGTCCTTGAAGTTGGTGTCATTCCCCGCATTGTGAGCATTCTCAAGTATAACAGCGAAGTAGAAATCCTAGAACAGGCGATATACGCTTTAGGGCTCATTGCCGATTATTCCCCGAGCTATAGGGATCGTGCTCTTAGCAATGGTTCTCTTCGACCACTATTATCTCTGGTGGAATCACTTCCAGGATCGTCTATGTTGATTGCAAGGACACTTTGTAGTTTGGTCCAAGGAAAGCCTCCGGTGAATTTTCAACGGGTAAAGAATGCCTTGCCTGTCCTTCAGAAACTCATCCACACGGCCAATGAAGAAGTTGTATCAGATGCATGCTGGGCTCTCTATCACCTTTCGGAAGGCCCAGAAGACCAAATTCAAGCTATTATTGAGGCAGGAGTATGCCCAAAACTTGTGGAGCTTCTACAGCATTCATCAGTTGCAGTAATTTCACCTGCGCTTCAGACTCTAGGAAATATTGTTACTGGTGACAATGCTCAGAAACAGATTGTAGTTGATAACCAAGTGCTCCCGGGTCTTTACCAACTTCTTATGCGTGGAAACAGAAAAAGCATCCGTATAGAAGCTTGTTTGGCAATCTCAAATATCACTTCTGGGAACGAAGCTCAAATAGAGGCTGTCCTTAAGGCCAATATTATACCTCAACTGGTTCAAATTCTTCAACAAGATGAGTTAGACATCAAGTCGGAGGCTGCCTGGGCGATCTATAATGCCACTGCTGGAGGATCTCACGACAATATCAGGTTGCTGGCGGATCAAGGTTGCATTAAGGCACTATGTGATATCTTGACCTGTCCAGACCTAACGGTTGTATCAGTTAGTCTGGAGGGGCTGGAGAACATTTTGAAGGTCGTGGGAGAAGCTGCCAAGGAAATGGTTTGTGGATGTGAAGGATTGGATAAGATTCAAAATTTGCTGACACTGACAATGGAATGCGATGAGAACGAAGATGATGAGAACGAAGATGAGAACGAGCACGAAGAGAAGCTAGAGGTTTTTGAGATAGCGCATAGGATTTTGAAGACGTTTTGGCCAGAGCTTGGTTTGGAAGAAAATGAACTCGAGAATCCGTTGGATGGTAGTCTACCTTTCGAGGTAACCAATACCTGA 1524 0.4462 MSERTGSGSGSDRTKRSNTSGVEPHESRRRKEENLIGVRRQKRARLRYPALTAIPKLLQSLCSEYPALESQITSHLNTLLALDDQIPLIDDVLKDVVLPRFVKFLDDEKEPQFQLEALWVLTNFAEASSKHTKVVLEVGVIPRIVSILKYNSEVEILEQAIYALGLIADYSPSYRDRALSNGSLRPLLSLVESLPGSSMLIARTLCSLVQGKPPVNFQRVKNALPVLQKLIHTANEEVVSDACWALYHLSEGPEDQIQAIIEAGVCPKLVELLQHSSVAVISPALQTLGNIVTGDNAQKQIVVDNQVLPGLYQLLMRGNRKSIRIEACLAISNITSGNEAQIEAVLKANIIPQLVQILQQDELDIKSEAAWAIYNATAGGSHDNIRLLADQGCIKALCDILTCPDLTVVSVSLEGLENILKVVGEAAKEMVCGCEGLDKIQNLLTLTMECDENEDDENEDENEHEEKLEVFEIAHRILKTFWPELGLEENELENPLDGSLPFEVTNT* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1914 507 Gene3D - 51 482 IPR011989 -
Gso19g1914 507 MobiDBLite consensus disorder prediction 1 35 - -
Gso19g1914 507 PIRSF Importin_alpha 4 49 IPR024931 GO:0005737|GO:0006606|GO:0061608
Gso19g1914 507 PIRSF Importin_alpha 45 494 IPR024931 GO:0005737|GO:0006606|GO:0061608
Gso19g1914 507 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 264 302 IPR000225 GO:0005515
Gso19g1914 507 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 222 264 IPR000225 GO:0005515
Gso19g1914 507 MobiDBLite consensus disorder prediction 18 35 - -
Gso19g1914 507 SMART arm_5 212 251 IPR000225 GO:0005515
Gso19g1914 507 SMART arm_5 295 336 IPR000225 GO:0005515
Gso19g1914 507 SMART arm_5 84 126 IPR000225 GO:0005515
Gso19g1914 507 SMART arm_5 381 421 IPR000225 GO:0005515
Gso19g1914 507 SMART arm_5 128 169 IPR000225 GO:0005515
Gso19g1914 507 SMART arm_5 338 378 IPR000225 GO:0005515
Gso19g1914 507 SMART arm_5 253 293 IPR000225 GO:0005515
Gso19g1914 507 MobiDBLite consensus disorder prediction 1 17 - -
Gso19g1914 507 PANTHER IMPORTIN ALPHA 12 491 - -
Gso19g1914 507 PANTHER IMPORTIN SUBUNIT ALPHA-4 12 491 - -
Gso19g1914 507 Pfam Armadillo/beta-catenin-like repeat 295 336 IPR000225 GO:0005515
Gso19g1914 507 Pfam Armadillo/beta-catenin-like repeat 338 377 IPR000225 GO:0005515
Gso19g1914 507 Pfam Armadillo/beta-catenin-like repeat 382 419 IPR000225 GO:0005515
Gso19g1914 507 Pfam Armadillo/beta-catenin-like repeat 222 250 IPR000225 GO:0005515
Gso19g1914 507 Pfam Armadillo/beta-catenin-like repeat 254 292 IPR000225 GO:0005515
Gso19g1914 507 SUPERFAMILY ARM repeat 12 445 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1914 Gso-Chr19 47854504 47858211 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1914 251 375 U-box Gene Family AT5G42340 30.400 3.73e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1914 K15042 - gmx:100793734 954.125