Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1906 ATGGCTTCAGTTGGTGTGGCACCAACATCATCAGGCTTGAGAGAATCCAGTGGTGTTGATAGGTTGCCAGAGGAGATGAATGATATGAGAATTAGGGATGATAAAGAAATGGAAGCCACCGTTGTCGATGGTAACGGAACAGAGACCGGACATATTATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGACTATAAGCTATATGGCAGAGCGGATTGTTGGACATGGATCATTTGGGGTTGTCTTCCAGGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAAGACAAGAGGTATAAAAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTTGTCTGTTTGAAGCATTGTTTCTTTTCAACCACCGAAAAGGATGAACTATACCTTAATTTGGTACTGGAGTATGTTCCCGAAACAGTTAATCGTGTGATCAAACATTATAACAAGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTAGTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAGTCTTGGTAAAAGGCGAACCAAATATATCGTACATATGCTCTAGATATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAATATACTACAGCTATTGACGTTTGGTCAGTTGGTTGTGTATTGGCTGAGCTTATGCTTGGACAGCCCTTGTTCCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTAGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTAGATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGAATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATGCAAGGAAGCAGTGCCCGTTTCTTGGCTTGTGA 1221 0.4201 MASVGVAPTSSGLRESSGVDRLPEEMNDMRIRDDKEMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERIVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVCLKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELMLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVPVEILLKLIPEHARKQCPFLGL* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1906 406 CDD STKc_GSK3 65 357 IPR039192 -
Gso19g1906 406 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 404 - -
Gso19g1906 406 MobiDBLite consensus disorder prediction 1 25 - -
Gso19g1906 406 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1906 406 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1906 406 SUPERFAMILY Protein kinase-like (PK-like) 69 380 IPR011009 -
Gso19g1906 406 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 404 - -
Gso19g1906 406 Gene3D Phosphorylase Kinase; domain 1 54 149 - -
Gso19g1906 406 ProSitePatterns Protein kinases ATP-binding region signature. 76 100 IPR017441 GO:0005524
Gso19g1906 406 Pfam Protein kinase domain 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1906 406 MobiDBLite consensus disorder prediction 1 16 - -
Gso19g1906 406 Gene3D Transferase(Phosphotransferase) domain 1 150 398 - -
Gso19g1906 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1906 Gso-Chr19 47793615 47798021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1906 76 382 MAP Kinase Gene Family AT2G43790 35.737 8.22e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gso19g1906 Pkinase 3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1906 K00924 - gmx:100795659 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1906 19 47793615 47798021 Gso19g1906 19 47793615 47798021 ECH