Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1901 ATGGGTGGAGATGGAGCCACGGCAAACGCGGAGGCGCAGTACGCCACGGCGAAGATATCGGTGTGGTGGGACATCGAGAACTGCCACGTCCCCAAGGGTTCGGATCCGCACGCGATCGCGCAGAACATCAGTTCCGCCCTCGTTCGCATGAACTACTGCGGCCCCGTCTCCATCTCCGCCTACGGCGACACCACTCGCATCCCCGCCTCTGTGCAGCACGCGCTCTCCAGCACCGGTATCTCCCTCAACCACGTCCCCGCCGGCGTGAAAGACGCAAGTGACAAGAAGATTCTTGTTGATATGCTGTTCTGGGCAGTGGACAATCCTGCACCTGCTAATTATTTATTAATTTCGGGTGACCGAGACTTCTCAAATGCTCTCCATCAACTTCGGATGAGGAGATATAATATTCTTCTTGCACAACCTCAGAAAGCATCTGCACCCCTAGTTGCAGCTGCCAAGAGTGTATGGCTTTGGACTAGCCTCTTAGCTGGAGGACCTCCTCTTTCTAATGGTGAATCACAACAACTTGGTAATGGTAGCCTTAGCCATGTATCATCTTCTGACTCCTTACAAATTCCAGTTACAAGTGCTGCTCAGATACAGCAACAGGTGGATTCCTATTCAGAAGTACATGTAGGAAATTCAAAATTTCCAAATGGAGGAAGGGGATTTGATTCTAGATATCAGGGGAAAACAAATTGGAGAAACCCGAGTCAATCAAATGGACCCAGAGCCATGAATCCACCGCCAGTTGGACTTCAAGATAATCGCAATCGTAATAATACAAACTCTCATCGACCTGGCAACTTTAATCCAAATGTTCCGCTAAGTGGACCTGCTACAAATTATGTTCATGGCAATACTGATCAGTTATGGAGCAATAACAGTAATCTACAGGGCAATCATCAAATTCCTTATTCACAGCCATTAAGACCAAACAACTTCCCATTGCAACCTCCTTTTGCACCTAGTAATTCATATACTCCAAATTCCCATACTTTTCCAACTTCTATGGTGCCACCTAGGACTGGTGGTCCCAATTTCACTTCAGGGCCACATACCAATGTGCCAGATATTGGTAATCTGAACATTTCTGGATATCCTAATAGTGTTCATAACCCACCAACTGTTCCACAACGGAGTGGAGAGCTGAAACAGAATTCTAATAATAATGCTCCACATCATTTAAGATCAATTGATGAAAAAAATGGACATATGGTACATAACAGTGGCACAAAACAATCACACCAAGGTTACCAACATGGTCCAGAATATCAACCTCCGCCATTGGCAGCAATGGGTAATAATAACCCTTCTGGTAATGGTATGTGGGGTTCTCCAGGATGTCCTAAACCTTCTGAATATGTACAAGGCCTAATAGGTGTTGTTTTACTTGCCTTGAACTCACTAAAAAATGCAAAGATGATGCCAACTGAGGCAAATATAACTGATTGCATCCGGTATGGAGATCCCAAGCACCGCAACACTGATGTTAAGAAGGCTCTTGAAAGTGCTATTGAGCAGAATATGGTGGTGAAACAGAATTTAGGTGCTTTGCCGTTGTATGTTGGTAAGAATGATAAACTTTGGAAATGTGTAAATCCTTTAGGTGGTACTCCTAAGCAGCACTCAAAAGAAACATGGGATGAAATTGAAAAGTTTTTAACAACTCCTGCTGGAAGATCAGCACTAATGGGTACACAGTGCAAGTATGAAGCAGGTATTGTGATTAAGAGTATGTGCTTTAAAGATCTTGCTTTGGGTGATGTCCTTCAGATATTGAACATGTTAATTACCCATAAAAAATGGGTTACGCATCATCCATCTGGTTGGCAACCACTTAACATTACTCTTCCCGAGACAAACCCTGGTTCAGGGGTTGTAGCTGGTGCATAA 1899 0.4439 MGGDGATANAEAQYATAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGNGSLSHVSSSDSLQIPVTSAAQIQQQVDSYSEVHVGNSKFPNGGRGFDSRYQGKTNWRNPSQSNGPRAMNPPPVGLQDNRNRNNTNSHRPGNFNPNVPLSGPATNYVHGNTDQLWSNNSNLQGNHQIPYSQPLRPNNFPLQPPFAPSNSYTPNSHTFPTSMVPPRTGGPNFTSGPHTNVPDIGNLNISGYPNSVHNPPTVPQRSGELKQNSNNNAPHHLRSIDEKNGHMVHNSGTKQSHQGYQHGPEYQPPPLAAMGNNNPSGNGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANITDCIRYGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWKCVNPLGGTPKQHSKETWDEIEKFLTTPAGRSALMGTQCKYEAGIVIKSMCFKDLALGDVLQILNMLITHKKWVTHHPSGWQPLNITLPETNPGSGVVAGA* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1901 632 CDD PIN_limkain_b1_N_like 18 142 - -
Gso19g1901 632 PANTHER LIMKAIN B LKAP 2 617 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso19g1901 632 MobiDBLite consensus disorder prediction 360 395 - -
Gso19g1901 632 Pfam OST-HTH Associated domain 569 618 IPR025677 -
Gso19g1901 632 Pfam NYN domain 18 154 IPR021139 GO:0004540
Gso19g1901 632 MobiDBLite consensus disorder prediction 360 447 - -
Gso19g1901 632 Gene3D - 9 161 - -
Gso19g1901 632 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 2 617 - -
Gso19g1901 632 MobiDBLite consensus disorder prediction 212 282 - -
Gso19g1901 632 MobiDBLite consensus disorder prediction 254 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1901 Gso-Chr19 47736622 47741035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1901 8 200 C2H2 Transcription Factor Family AT5G61190 70.466 1.33e-85 287
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1901 19 47736622 47741035 Gso19g1901 19 47736622 47741035 ECH
Gso19g1901 19 47736622 47741035 Gso3g1937 3 44925478 44939671 GST