Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1900 ATGACTTTGAATTACCAGCGTTTTGGAAGCTACCATAACAAAATGGATAGTGATAATTATTCAAAAGAGAAGGAGGGGATGGTGTTGAACATAGCTATCATGGTGGTATCCATGATCGCCATTGCAATGGTCACCGTTTCTGTTGTTGCACACATAGACGGTTCCAGACAAGATGCAGGGAAGAATGTGAAGACCCTTCTCTCCGTTTGCACCAAAACGGAGGAACCAGAAATCTGTTTCCGCGTGTTGAAACACGTTGGTGAGACAGCCACGGTTTTGAATTACGTGAAAGCTGCTATTAATGCAACCCTCACGGAATTGTTGTTTGTGATTAGGCCAAAACCTCGTCTTGAAAGGAGCCTCACGCTTCTGCAGCAAGAGTCATATAAAGATTGTTTGGAACTGTTGAGTTTGGGAAAGGAAGAATTAGGATCTTTGTATTTGATGGCAAATTTTTATGTAGATTTGAGCGAACTAAACTTAGATGATCTGTTGAATAGCCTAAGTGCTGTCATTTCGTACCAACACGCTTGTACTGATGAATTGATTCGAATAAATAGCTATGGGGTTTTGGGGTATTCCTTGCAAGTTCCAATTCTTCTCACAAGGATAGCCTTGGCCATTGTTGATAATTTCTCTGAGAGGCCTAATAGCAGAGAACCACGACGGCTAGAAGAATTTGCAAGGTGGTTCTCAGAAAGAGAGAGAAAAATGATAGAGTCCAATCAAGGAGATAATGGTGGTGAACAATGGCCAATAAATGTGGTTGTGGCTCAAGATGGTAGTGGCCATTTCTCAACCATAGCTGACTCACTCAATGCATGCCCAAAGAATAAAACGATTGCATGTGTTATTTATGTGAAAAGAGGTAAATATGAAGAGAGAGTCGTGATTCCTAAGGGTGTAAAAGTGTTCATGTATGGTGATGGACCTGCGCATACCATTGTCAGTGGTACCAACACAAGAGACCCCAGGATAGTCACAACCTCCTTTCGAGCAGCTACTTTCGTGGTAATGGGGAAAGGATTCATCTGCAAAGACATGGGTTTCACTGCCCCAGCTGACATTACAGGAGCACCAGCACTCCTAGTCCTTTCTGATCACGCAGCATTCTTCAACTGCAAAATTGATGGTAACGAAGGAACCTTGTACGCTGTAGCTCAACGCCAATTCTACCGAGACTGTGAGATTCTTGGCAGTGTGGACATCATCAAAGGAGACTCAGCAACTGTAATTCAAAACTCACAAATCATACTGAAGCCTCGAAACTCCTCTGATTTGGTTTTAAGAAGAAATGTCATGAGTGCTCAATCCAGGTTAGACAAGTATCAGACAACTGGGCTAGTGATTCAAAACTGCACCATCACAGCACAGAAAGAAAGCATGAATACTCTTAATGCTACCACTTACTTGGGCTCCCCGTATAGTGAATACTCAAGAACAATCATAATGGAATCCTTTTTAGGAGATGTGATACATCCAAAAGGTTGGTGTAAATGGAGTGACAACTATGGCATCGAAACAGCAACATTCTGGGAGTTTGATAATAGAGGGCCTGGGGCAAGAACTGACAAGAGGGTCAAGTGGAATGGCTACAGTACAATTTTTGAGAGAAACCAAATGGTTAGTTACACAGTTGGTCGGTTTCTCCAAGCTGACCAATGGTTGCTAAATAGAGGCATTCCATACGAATCTGGGTTTGTTGTACTGAAATAG 1716 0.4237 MTLNYQRFGSYHNKMDSDNYSKEKEGMVLNIAIMVVSMIAIAMVTVSVVAHIDGSRQDAGKNVKTLLSVCTKTEEPEICFRVLKHVGETATVLNYVKAAINATLTELLFVIRPKPRLERSLTLLQQESYKDCLELLSLGKEELGSLYLMANFYVDLSELNLDDLLNSLSAVISYQHACTDELIRINSYGVLGYSLQVPILLTRIALAIVDNFSERPNSREPRRLEEFARWFSERERKMIESNQGDNGGEQWPINVVVAQDGSGHFSTIADSLNACPKNKTIACVIYVKRGKYEERVVIPKGVKVFMYGDGPAHTIVSGTNTRDPRIVTTSFRAATFVVMGKGFICKDMGFTAPADITGAPALLVLSDHAAFFNCKIDGNEGTLYAVAQRQFYRDCEILGSVDIIKGDSATVIQNSQIILKPRNSSDLVLRRNVMSAQSRLDKYQTTGLVIQNCTITAQKESMNTLNATTYLGSPYSEYSRTIIMESFLGDVIHPKGWCKWSDNYGIETATFWEFDNRGPGARTDKRVKWNGYSTIFERNQMVSYTVGRFLQADQWLLNRGIPYESGFVVLK* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1900 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 63 212 IPR035513 -
Gso19g1900 571 Pfam Pectinesterase 254 553 IPR000070 GO:0030599|GO:0042545
Gso19g1900 571 Pfam Plant invertase/pectin methylesterase inhibitor 68 182 IPR006501 GO:0004857
Gso19g1900 571 SUPERFAMILY Pectin lyase-like 251 564 IPR011050 -
Gso19g1900 571 Gene3D - 253 569 IPR012334 -
Gso19g1900 571 SMART PMEI_2 61 208 IPR006501 GO:0004857
Gso19g1900 571 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 18 568 - -
Gso19g1900 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 212 IPR035513 -
Gso19g1900 571 PANTHER PECTINESTERASE 18 568 - -
Gso19g1900 571 CDD PMEI-like_3 68 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1900 Gso-Chr19 47732527 47735153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1900 60 567 Carbohydrate Esterase AT2G26450 35.227 1.56e-89 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1900 K01051 - gmx:102665007 1116.68