Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1897 ATGGAATATCGATGGACGAATGGTAGGCAGGAAACCGGTGGCCGTGACAGAAGGCAATCTAAAAGGGAACAGGCATATCAGGACTCTCTTATTGAGGATTTGTCAGAGGATTTTAGTTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGATAACGTGGAGCAAGCATCTTTGGACACACAGATAACATCATCTAATATTGGCTTTAAGCTCCTCCAAAAGATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCATTGAGCCAATAAAATCTGGAATTAGAGATCCAAGACTGGGGGTTGGCAAGCAAGAAGAAGACGATTTCTTTACCGCAGAAGAAAATATCCAGCGAAAAAAACTGGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAGCGGGAGGTCTTAGCTGAACGTGAACAAAAAATTCAAACTGAAGTGAAAGAAATCCGAAAGGTGTTCTATTGTGATCTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGTTTCAAACAAATGAAGGAAATGCATGGTGGTAGTAGTCGGGATGATAGGCAAAAGCGAGAACAGCTGCGTCAAGAGAGAGAAATGGCAAAGTTTGCTCAAATTGCTGATGCTCAAAAACAGCAACAACTTCAACTGCAACAAGAGTCTGGATCAGCAACAGTACCCTCGGAATCTAAAACTGCTACTGCACTTACAGATCAGGAGCAGCGAAATACTTTGAAGTTTGGGTTTTCTTCTAAAGGCAGTGCTTCCAAGATTACGTTTGGAGCCAAGAAGCAAAATGTTGCAAAGAAGCAAAATGTTCCGATCTCTTCTATATTCAGTAATGATAGCGATGAAGAATAA 915 0.4164 MEYRWTNGRQETGGRDRRQSKREQAYQDSLIEDLSEDFSLPINHRPTENVDLDNVEQASLDTQITSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRKKLDVELEETEEHVKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGGSSRDDRQKREQLRQEREMAKFAQIADAQKQQQLQLQQESGSATVPSESKTATALTDQEQRNTLKFGFSSKGSASKITFGAKKQNVAKKQNVPISSIFSNDSDEE* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1897 304 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Gso19g1897 304 MobiDBLite consensus disorder prediction 9 27 - -
Gso19g1897 304 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Gso19g1897 304 Pfam Zinc-finger double-stranded RNA-binding 161 188 IPR022755 -
Gso19g1897 304 MobiDBLite consensus disorder prediction 238 257 - -
Gso19g1897 304 SUPERFAMILY beta-beta-alpha zinc fingers 144 196 IPR036236 -
Gso19g1897 304 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 304 - -
Gso19g1897 304 MobiDBLite consensus disorder prediction 1 27 - -
Gso19g1897 304 SMART G-patch_5 64 109 IPR000467 GO:0003676
Gso19g1897 304 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1897 Gso-Chr19 47715601 47719208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1897 1 304 C2H2 Transcription Factor Family AT5G26610 63.844 4.19e-123 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1897 - - gmx:100793206 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1897 19 47715601 47719208 Gso19g1897 19 47715601 47719208 ECH
Gso19g1897 19 47715601 47719208 Gso3g1934 3 44900435 44904119 GST