Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1895 ATGCCTCTGCATGAGTTATACCGTGTGGCTAAAGGGAAGCTTGATCCTATAGAGATGAACAACAACACATGTGCAGTTGATCAATCTTCTGTACCCAATAATGATTTGCTTGAGTTGGTTTGGGAAAAGGGCCAGATTTCAGTGCAGGGTCAGTTCAGTAGAGCTAGAGTGAGCCCAAATTGTAAAACTTTGCCATCTCACTGCTTACCATCTCACACTCCAATAGGATATGCTAATAATGCTATTTCTACCAATACAAGGATGGGGAAGTGTGGGAATTTAGGTGCTGAATTGAATGAAATTAGAAGGCTTGTCCCTTCAGGTGAAGTGGATTTGAGTGAAGAAGAGGAAGACATGGTGATGCCTTGGTTCAATTATGGAATGGAAGACTCTTTGCAACACGGATATAGTACTGATTTTTTCCATGAACCATCATCATATGGGGTCACCATGAATGAGCTTTCAGCATCAAATAATTTTTCTTTGCTAGATAGAAGAAATAATTGTACTAAGATATTTAGGGACACTCATAAACACTCTTCATATGCACCTGTTAGATCCAGCGTAGCAGATATAGCTGAAAACAATGCAAATAATGTTCCATCTGGCTCAAGTGGTTTTTCTAGCTTAAAGATGGAGAGGCAAGGTCCAGTTATGTGTAGCAGTAGTTCCACCATGATGAATTTTTCCCATTTTGCAAAACCTGCTGCTATTGTCAAAGCTAACATTGAGAACATTGGCTTGGCATCAAGATCAGGAAATGAGGGAATACAGATAAAAAGTGCTGCTGCAACTGTGACCAATCCTGCTGAATCAACAAAAGTTGAATTAAGTGGAGAGTGTCCAAAGAAACCAGCCACACACAATCAAGATCAAGATGTCACTGTTTCTACAAAGTGTGACCCTTCTTGCAAAGATGTTTCCAAGGTTGATCAAAATCAAACTTCAAATCTAGTTGTTGGGGAAAGTGTGAATAAAGGACACGAAGCTGTTGAAAAAGGAGTGGAGCTAGCTGTGGTCTCTTCCTCTGTTTGCTCTGGCAATGGTCCAGAGAGGGGTTCGGAGGATCCAAATCAAAATTTGAAGCGAAAAAGTAAAGACACTGAGGACTTTGAGAGCCAAAGTGAAGATGTTGAGGAAGAATCAGTTGGTGTCAACAAGGAAGTTCCTGCACGACGAAATGGAGCCAAGAAAAGCCGTTCAGCCGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCGTTACAGGAACTTATACCAAATTGCAATAAGGCGGATAAAGCTTCAATGTTGGATGAGGCGATAGAGTATCTCAAAACACTTCAACTCCAACTTCAAATTATGTCAATGGGAACTAGTTTATGTATGCCTGCAATGATGTTACATCCGGGAATGCAACACATGCATGCACCACATATGGGTCCTTTTTCACCTATAGGTGTTGGCATGCAAATGAGGTTAGGAGTGGGTTGTGGAATGGGCATGCCTGATGCTAATGATATTGAGTCCTCTAGATTTATTCAAGTGCCCCAAATGCAAGGAACTCATCATCCTAGTCAGGGTCACCCCATTCCAATGCCACATGCTCCCATCTTTTCTTTCCCAGGAGAACCTTTTATCAACCCATCAACTTTAGGACTTGTGGAAACTGTGGATAAGGCTTCTTCAGCCTTTGGCTTAATTAAGGATCAGATTCCACAACTTGCACAGAACACCAACAACGGTTGTAATTCAACAAATCAGATGTCAACAGTACAGTGTGAAGCAACCATTGGTGGATTTGAACACTCAATTTTGGTACTTAATAGTGGTCATGCAACTTCGGTAAATGACAGAGGAGCTATTAATCCCAGTACAGAAGATAACCCTTATCATTGA 1902 0.4127 MPLHELYRVAKGKLDPIEMNNNTCAVDQSSVPNNDLLELVWEKGQISVQGQFSRARVSPNCKTLPSHCLPSHTPIGYANNAISTNTRMGKCGNLGAELNEIRRLVPSGEVDLSEEEEDMVMPWFNYGMEDSLQHGYSTDFFHEPSSYGVTMNELSASNNFSLLDRRNNCTKIFRDTHKHSSYAPVRSSVADIAENNANNVPSGSSGFSSLKMERQGPVMCSSSSTMMNFSHFAKPAAIVKANIENIGLASRSGNEGIQIKSAAATVTNPAESTKVELSGECPKKPATHNQDQDVTVSTKCDPSCKDVSKVDQNQTSNLVVGESVNKGHEAVEKGVELAVVSSSVCSGNGPERGSEDPNQNLKRKSKDTEDFESQSEDVEEESVGVNKEVPARRNGAKKSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKADKASMLDEAIEYLKTLQLQLQIMSMGTSLCMPAMMLHPGMQHMHAPHMGPFSPIGVGMQMRLGVGCGMGMPDANDIESSRFIQVPQMQGTHHPSQGHPIPMPHAPIFSFPGEPFINPSTLGLVETVDKASSAFGLIKDQIPQLAQNTNNGCNSTNQMSTVQCEATIGGFEHSILVLNSGHATSVNDRGAINPSTEDNPYH* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1895 633 PANTHER TRANSCRIPTION FACTOR PIF3 1 591 IPR044273 GO:0003700|GO:0006355
Gso19g1895 633 MobiDBLite consensus disorder prediction 356 371 - -
Gso19g1895 633 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 398 462 IPR036638 GO:0046983
Gso19g1895 633 CDD bHLH_AtPIF_like 400 462 - -
Gso19g1895 633 SMART finulus 406 455 IPR011598 GO:0046983
Gso19g1895 633 MobiDBLite consensus disorder prediction 342 414 - -
Gso19g1895 633 Coils Coil 361 381 - -
Gso19g1895 633 MobiDBLite consensus disorder prediction 277 296 - -
Gso19g1895 633 MobiDBLite consensus disorder prediction 380 414 - -
Gso19g1895 633 Gene3D - 395 457 IPR036638 GO:0046983
Gso19g1895 633 PANTHER TRANSCRIPTION FACTOR PIF3 1 591 - -
Gso19g1895 633 Pfam Helix-loop-helix DNA-binding domain 404 450 IPR011598 GO:0046983
Gso19g1895 633 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 400 449 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1895 Gso-Chr19 47676632 47681593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1895 1 475 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.678 3.89e-65 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso19g1895 HLH 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1895 K12126 - gmx:102659557 1276.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1895 19 47676632 47681593 Gso19g1895 19 47676632 47681593 ECH