Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1893 ATGGAGATGGAGAGAGTTTTGTGGGTTGGCATTGCTATAGGACTTGTTTTCAGCAACTGGGTCGTAGGATATGAACAATATCACTTCAATGAAACAGAGTTGTCTTTATTAGAGGCTCATGAAGCTTCCTTGTCCTACGCCGGGACCGAGAGAAATAATCTTCTGCTGGTAGGACTCACCCTTATTCAAAATGCTGCTGCTAAAGGAGCAGTCTGCTTGGATGGAACATTGCCTGGTTATCATTGGCATCGGGGATATGGATCAGGAGCAAATAGCTGGCTTATTAATTTAGAGGGTGGTGGATGGTGTAATAATATTAGAACATGTGTTTATCGCAAGAAAACCCGGCGTGGATCATCAGATTTCATGGAAAAGGAGATACCTTTTACTGGAATATTAAGTAATAAGGCTGAAGAAAATCCAGATTTTTTCAATTGGAATAGAGTAAAGCTTCGTTATTGTGATGGCGCCTCATTTACTGGGGATAGTGAAGATGAGACTGCAGAACTGCAATTCAGAGGACAGCGTATTTGGGCAGCTGCAATGGAAGATTTGATGTCAAAAGGAATGCGTTTTGCCAATCAGGCTCTTCTTTCGGGATGCTCTGCGGGTGGCCTGGCTACTATTATTCATTGTGATGAATTTCGTGGTCTCTTTCCAAGGACCACCAAAGTGAAATGTCTTAGTGATGCTGGGTTGTTTCTTGATGTGATTGATGTATCTGGAGGGCATACCCTTAGGAATTTATACAGTGGTGTTGTAGGATTGCAGGGAGCACAGAAGAATCTGCCACAAATTTGTACTAATCACCTTGATCCCATCTCGTGCTTCTTTCCTCAAAACTTGATTGCCAGTGTTAAGACCCCGCTATTCATTCTTAATGCTGCTTATGATTCATGGCAGATCCAGTCCAGTTTAGCTCCTCCATCAGCAGATCCCCATGGCTATTGGCAACAATGTAGATTAAACCATGCTAAATGTACTGGACCACAAATTCAATTTCTGCAAGGATTCAGGAATCATATGCTGAATGCTATTAAATACTTCTCAAGATCAAAGCAGAATGGCTTGTTTATTAATTCTTGTTTTTCTCACTGCCAAACTGAGAGGCAGGATACATGGTTTGCTGACAATTCTCCTGTTATTAGGAACAAGGCAATTGCTCTGGCTGTTGGAGACTGGTATTTCGATCGAGCAGGTGTTAAGGCCATTGATTGTCCTTACCCTTGTGATAATACATGCCATCATCTGATTTTCAGATGA 1263 0.4188 MEMERVLWVGIAIGLVFSNWVVGYEQYHFNETELSLLEAHEASLSYAGTERNNLLLVGLTLIQNAAAKGAVCLDGTLPGYHWHRGYGSGANSWLINLEGGGWCNNIRTCVYRKKTRRGSSDFMEKEIPFTGILSNKAEENPDFFNWNRVKLRYCDGASFTGDSEDETAELQFRGQRIWAAAMEDLMSKGMRFANQALLSGCSAGGLATIIHCDEFRGLFPRTTKVKCLSDAGLFLDVIDVSGGHTLRNLYSGVVGLQGAQKNLPQICTNHLDPISCFFPQNLIASVKTPLFILNAAYDSWQIQSSLAPPSADPHGYWQQCRLNHAKCTGPQIQFLQGFRNHMLNAIKYFSRSKQNGLFINSCFSHCQTERQDTWFADNSPVIRNKAIALAVGDWYFDRAGVKAIDCPYPCDNTCHHLIFR* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1893 420 Pfam Pectinacetylesterase 55 399 IPR004963 GO:0016787
Gso19g1893 420 PANTHER NOTUM-RELATED 4 419 IPR004963 GO:0016787
Gso19g1893 420 PANTHER PECTIN ACETYLESTERASE 4 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1893 Gso-Chr19 47650100 47653969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1893 56 420 Carbohydrate Esterase AT1G57590 74.247 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1893 K19882 - gmx:100788448 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1893 19 47650100 47653969 Gso19g1893 19 47650100 47653969 ECH
Gso17g0352 17 3197063 3202857 Gso19g1893 19 47650100 47653969 ECH
Gso19g1893 19 47650100 47653969 Gso3g1929 3 44823206 44828245 GST
Gso19g1893 19 47650100 47653969 Gso10g1304 10 39139411 39144625 PCT
Gso10g1304 10 39139411 39144625 Gso19g1893 19 47650100 47653969 PCT