Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1890 ATGTCCTCTTCAAGGCCCAGCCAATCATCCAGCAATAATTCTGGCAGATCTAGAACATCAAGACTCAGTGCTAGGAGGATGGCTCAGACAACTTTAGATGCAAAACTGCATGCAACTTTTGAGGAATCGGGTAGTTCTTTTGACTACTCCAGTTCAGTGAGAATGTCTCCTGCTGGTACTGTCAGTGGAGACCATCAACCAAGGTCTGATAGAGCAACAAGTTCTTACCTCCATCAGACACAGAAAATCAAGCTTATCCAGCCATTTGGGTGTTTGTTAGCTTTAGATGAGAAAACATGCAAGGTCATTGCTTACAGTGAGAATGCACCTGAAATGCTCACCATGGTTAGTCATGCTGTCCCCAGTGTAGGTGACCACCCTGCTCTTGGCATTGGCACTGACATAAGAACTATTTTCACTGCCCCAAGTTCTGCTGCTATTCAGAAGGCACTGAGATTTGGGGATGTTTCACTTCATAACCCCATTCTAGTCCATTGCAAGACCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTTACCGGTAGTGTGATCATCGATTTTGAGCCGGTCAAGCCTCATGAAGTTCCCATGACTGCATCAGGAGCCCTGCAATCCTACAAGCTTGCAGCAAAAGCAATAACTAGATTGGAATCCTTGACTACTGGGAACATGGAAACACTATGTAACACAATGGTTCGAGAGGTTTTTGAGCTCACAGGTTATGACAGAGTGATGGCTTATAAATTCCATGAGGATGATCATGGGGAAGTGATTGCTGAGGTTAAAAGGCCAGGCCTAGAGCCATATCTGGGGTTGCACTACCCAGCCACTGATATTCCTCAGGCGACACGCTTTTTGTTTATGAAGAACAAGGTGCGTATGATAGTTGATTGTTGTGCAAAGCATGTGAATGTGCTTCAAGACAAAAAAATTCCATTTGATTTAACCTTGTGTGGATCAACCTTGAGAGCTGCTCATAGTTGCCACTTGCAATACATGGAGAACATGAATTCTAGTGCTTCCTTGGTTATGGCAGTTGTGGTAAATGACAATGATGAAGATGGGGATAGTTCTGATGCTGTTCAACCACAGAAGAGTAAGAGACTCTGGGGTTTAGTAGTTTGCCATCACACTACTCCCAGATTCGTTCCTTTCCCTCTTAGGTATGCTTGTCAATTTCTGGCTCAAGTATTTGCGGTTCATGTGAGCAAAGAGCTAGAGATAGAGTATCAGATTATTGAGAAGAACATCCTGCAAACTCAAACACTCTTGTGTGATATGCTGGTGCAAGGTGAGCCCCTAGGCATTGTTTCACAAAGTCCTAATATAATGGATCTTGTGAAGTGTGATGGAGCAGCCCTGCTATATAAAAACAAGGTGTGGCGATTAGGGGTAACACCAAGTGAATCTCAGATAAAAGAGATAGCTTTGTGGCTCTTTGAGTGCCATGAGGATTCCACAGGTTTTTGTACAGATAGCTTGTCTGATGCAGGCTTCCCTGGGGCTGCTGCTCTTGGTGATATTGCATGTGGAATGGCAGCTGCCAGAATAGCTTCCAAAGATATACTTTTCTGGTTTCGGTCTCACACAGCCTCAGAAATCCGATGGGGTGGTGCAAAGCATGAGCCTGGTGAAAGGGATGATGGTAGGAGGGTGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGCTTACCCTGGAAGACCTATGAAACGGATGCCATTCATTCGTTGCAGTTAATACTGAGAGATGCATTCAAAGAGACACAGAGCATGGAGATAAGCACATATGCTATCGATACAAGGCTAGGTGATTTGAAGATTGAAGGAATGCAAGAACTGGATGCAGTGACAAGTGAGGTGGTAAGGTTAATTGAAACAGCAACGGTGCCAATTTTGGCGGTTGATGTTAATGGGATGATCAATGGATGGAACACAAAAATTGCTGAGTTGACAGGTCTTCCAGTTGATGAAGCTATTGGAAAGCATTTACTCACACTTGTAGAGGATTTTTCAGTAGATAGAGTCAAGAAGATGTTGGACATGGCATTGCAGGGTGAGGAAGAGAGAAATGTCCAATTTGAGATCCAAACACATCATATGAAGATTGATTCTGGTCCCATCAGCTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTTCAAGATAATGTTGTGGGAGTTTGTTTTCTGGCACAAGATATAACTGCTCAGAAAACAATGATGGACAAATTCACCCGAATTGAAGGTGACTACAAGGCAATTGTACAGAACCCAAACCCATTGATCCCTCCAATATTTGGCACAGATGAATTTGGTTGGTGTTGTGAATGGAATTCAGCTATGGCAAAATTAACTGGATGGAAGCGAGAGGAGGTAATGGATAAAATGCTTTTAGGAGAGGTTTTCGGGACCCAAATAGCTTGTTGTCGCCTAAGGAATCATGAAGCTGTTGTTAACTTTAGCATTGTACTTAATACAGCCATGGCTGGTTTGGAAACAGAGAAGGTTCCTTTTGGTTTCTTTGCTCGTGATGGAAAGCATGTAGAATGTATTCTTTCTATGACTAAGAAATTGGATGCAGAAGGTGTAGTTACTGGTGTCTTCTGCTTCTTGCAACTAGCAAGTGCAGAGCTGCAACAAGCATTACACATTCAGCGCATATCTGAACAAACTTCATTGAAAAGACTGAAAGATTTAACTTATTTGAAAAGGCAAATCCAGAATCCTTTATATGGGATTATGTTCTCCCGGAAATTGTTAGAGGGTACTGAGTTGGGAGCTGAACAAAAACAATTTCTGCAAACGGGCATTCGGTGTCAACGCCAGATTAGCAAAATTCTGGATGACTCGGATCTTGACAGCATCATTGATGGCTACATGGATTTGGAGATGGTTGAATTCACTTTGCATGAAGTTTTGGTTGCCTCCCTAAGTCAAGTCATGACAAAGAGTAATGCAAAAGGTATCCGAGTAGTCAATGATGTTGAAGAGAAGATCACAACAGAGACCTTATATGGTGATAGTATCAGGCTTCAGCAGGTCTTAGCTGACTTTTTATTGATTTCCATCAATTTCACACCAACTGGAGGTCAGGTTGTTGTAGCAGCCACGCTAACCCAACAGCAGTTAGGGAAATTAGTTCATCTTGCTAATTTGGAGTTCAGCATAACGCATGATAGTTTTGGGGTTCCAGAAACATTGCTGAACCAGATGTTTGGACGCGATGGACATGAATCTGAGGAGGGTATTAGCATGCTGATTAGCAGAAAGCTGCTAAAGCTCATGAATGGAGACGTACGTTATTTAAGGGAAGCAGGCAAATCATCTTTCATCCTATCTGTTGAACTTGCCGCAGCACATAAATCCAACACTTAA 3393 0.4282 MSSSRPSQSSSNNSGRSRTSRLSARRMAQTTLDAKLHATFEESGSSFDYSSSVRMSPAGTVSGDHQPRSDRATSSYLHQTQKIKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSSAAIQKALRFGDVSLHNPILVHCKTSGKPFYAIIHRVTGSVIIDFEPVKPHEVPMTASGALQSYKLAAKAITRLESLTTGNMETLCNTMVREVFELTGYDRVMAYKFHEDDHGEVIAEVKRPGLEPYLGLHYPATDIPQATRFLFMKNKVRMIVDCCAKHVNVLQDKKIPFDLTLCGSTLRAAHSCHLQYMENMNSSASLVMAVVVNDNDEDGDSSDAVQPQKSKRLWGLVVCHHTTPRFVPFPLRYACQFLAQVFAVHVSKELEIEYQIIEKNILQTQTLLCDMLVQGEPLGIVSQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIKEIALWLFECHEDSTGFCTDSLSDAGFPGAAALGDIACGMAAARIASKDILFWFRSHTASEIRWGGAKHEPGERDDGRRVHPRSSFKAFLEVVKTRSLPWKTYETDAIHSLQLILRDAFKETQSMEISTYAIDTRLGDLKIEGMQELDAVTSEVVRLIETATVPILAVDVNGMINGWNTKIAELTGLPVDEAIGKHLLTLVEDFSVDRVKKMLDMALQGEEERNVQFEIQTHHMKIDSGPISLVVNACASRDLQDNVVGVCFLAQDITAQKTMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMAKLTGWKREEVMDKMLLGEVFGTQIACCRLRNHEAVVNFSIVLNTAMAGLETEKVPFGFFARDGKHVECILSMTKKLDAEGVVTGVFCFLQLASAELQQALHIQRISEQTSLKRLKDLTYLKRQIQNPLYGIMFSRKLLEGTELGAEQKQFLQTGIRCQRQISKILDDSDLDSIIDGYMDLEMVEFTLHEVLVASLSQVMTKSNAKGIRVVNDVEEKITTETLYGDSIRLQQVLADFLLISINFTPTGGQVVVAATLTQQQLGKLVHLANLEFSITHDSFGVPETLLNQMFGRDGHESEEGISMLISRKLLKLMNGDVRYLREAGKSSFILSVELAAAHKSNT* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1890 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1012 1122 IPR003594 -
Gso19g1890 1130 TIGRFAM sensory_box: PAS domain S-box protein 630 746 IPR000014 -
Gso19g1890 1130 Gene3D - 412 585 IPR043150 -
Gso19g1890 1130 PRINTS Phytochrome signature 139 161 IPR001294 GO:0006355|GO:0009584
Gso19g1890 1130 PRINTS Phytochrome signature 239 258 IPR001294 GO:0006355|GO:0009584
Gso19g1890 1130 PRINTS Phytochrome signature 324 345 IPR001294 GO:0006355|GO:0009584
Gso19g1890 1130 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Gso19g1890 1130 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Gso19g1890 1130 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Gso19g1890 1130 PRINTS Phytochrome signature 626 642 IPR001294 GO:0006355|GO:0009584
Gso19g1890 1130 PRINTS Phytochrome signature 645 660 IPR001294 GO:0006355|GO:0009584
Gso19g1890 1130 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355|GO:0009584
Gso19g1890 1130 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355|GO:0009584
Gso19g1890 1130 MobiDBLite consensus disorder prediction 1 28 - -
Gso19g1890 1130 Gene3D PAS domain 769 883 - -
Gso19g1890 1130 SMART HKATPase_4 1012 1124 IPR003594 -
Gso19g1890 1130 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Gso19g1890 1130 MobiDBLite consensus disorder prediction 1 27 - -
Gso19g1890 1130 SMART HisKA_10 901 965 IPR003661 GO:0000155|GO:0007165
Gso19g1890 1130 CDD PAS 767 878 IPR000014 -
Gso19g1890 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 224 397 IPR016132 -
Gso19g1890 1130 Gene3D PAS domain 622 755 - -
Gso19g1890 1130 Gene3D - 205 568 IPR029016 -
Gso19g1890 1130 CDD PAS 634 740 IPR000014 -
Gso19g1890 1130 Pfam Phytochrome region 420 595 IPR013515 GO:0006355|GO:0009584
Gso19g1890 1130 Gene3D - 940 1117 IPR036890 -
Gso19g1890 1130 Pfam PAS fold 626 740 IPR013767 GO:0006355
Gso19g1890 1130 Pfam PAS fold 756 878 IPR013767 GO:0006355
Gso19g1890 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 83 193 IPR035965 -
Gso19g1890 1130 SMART pas_2 625 691 IPR000014 -
Gso19g1890 1130 SMART pas_2 755 825 IPR000014 -
Gso19g1890 1130 Gene3D PAS domain 83 327 - -
Gso19g1890 1130 ProSiteProfiles PAS repeat profile. 623 693 IPR000014 -
Gso19g1890 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 876 IPR035965 -
Gso19g1890 1130 SMART gaf_1 224 417 IPR003018 GO:0005515
Gso19g1890 1130 PIRSF Phytochrome_conventional 1 1130 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Gso19g1890 1130 PANTHER PHYTOCHROME A 1 1126 - -
Gso19g1890 1130 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1126 - -
Gso19g1890 1130 Pfam GAF domain 224 407 IPR003018 GO:0005515
Gso19g1890 1130 MobiDBLite consensus disorder prediction 46 75 - -
Gso19g1890 1130 SUPERFAMILY GAF domain-like 415 595 - -
Gso19g1890 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 629 735 IPR035965 -
Gso19g1890 1130 Pfam PAS fold 76 191 IPR013654 GO:0006355
Gso19g1890 1130 ProSiteProfiles Histidine kinase domain profile. 907 1126 IPR005467 -
Gso19g1890 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 968 1115 IPR036890 -
Gso19g1890 1130 SUPERFAMILY GAF domain-like 204 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1890 Gso-Chr19 47619981 47625028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1890 1 1127 Histidine Kinase Gene Family AT1G09570 74.291 0.0 1762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1890 K12120 - gmx:100791098 2191.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1890 19 47619981 47625028 Gso19g1890 19 47619981 47625028 ECH
Gso19g1890 19 47619981 47625028 Gso10g1299 10 39063744 39069644 PCT
Gso10g1299 10 39063744 39069644 Gso19g1890 19 47619981 47625028 PCT