Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1888 ATGGCGTGGCGTGAGCTTGGAAAGAAGAGAATATATATGAATTTTACTAGAACGTTGACAACAACACCATTTAGGTATGCAGCAGGATCAAATTTTGCATCAATCTTTACTGTGCAATCTGTTTGTGCATCAGCAAGATGTGTGCCGGATTTCACCAACCAATCATCTCAGGGAGTGGCTGGTTTTGGCAGGGAGACTAAAGAATGTGAAATACGGTGCTTCCATGCTAGTTCGCAAGTCTGGGCAAGAAGTGATGGACCATTAGGTTTGCAGACCCCAAAGAGGGTATATGTGAAAAGGGGTGGTAGAAACCAGCTACCTGTTGGAGCTCCTTATGCCTGTCGTAATGTTCCAGCTACCAAATCTAATCCTGATAAAACAATAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGCACCGGAAGATCAGTATCTTCTTTGCAGGATATCCTCACTGATGTTGGCGAAAAGTTTCAATCAGAGTTTGAGCTTCTGAGCATGGATATTGCTGAACTTGTCGCAATGGAGGCTGGCATCAATGTGAAGAGGCTACATTCAGCTGAAGGTGCAGAAATTTTACCACGTTCTGCAGTTGTAACAGTGATGGGTCATGTTGATCATGGTAAAACTTCTCTTCTTGACGCCTTGCGTCAAACATCAGTGGCAGCCAAGGAAGCCGGTGGCATAACTCAACATATAGGTGCTTTTGTGGTGGCCATGCCATCAGGAGCATCAATCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTTACAGATATAGTGGTGCTGGTTGTTGCTGCAGATGATGGTGTGATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTAGTTGCCATTAACAAATGTGATAAAGCAGGTGCAAATTCTGAAAAAGTTAAACTGCAGCTTGCTTCAGAGGGCTTGCTTCTGGAGGAGATGGGTGGGGATGTTCAAGTTGTTGAGGTTTCAGCAACTGAAAAAATTGGACTGGATAACCTAGAAGAAGCTTTACTACTTCAGGCTGATATGATGGATCTTAAAGCACGAATTGATGGGCCTGCTCAAGCATATGTGGTGGAAGCGAGACTTGACAAAGGACGGGGTCCATTAGTAACTACTATAGTGAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTGGTTGTAGGCTCACAATGGGGAAGAATAAGGGCTATTAAAGATATGACAGGGAAGTTAACTCAACGAGCAACACCTGCTATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTGCCAATGGCCGGTGATGATGTTATTGTTGTTCACTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGCAAAGGAAATATGAGGAGAACAGGCTTAGGAATAAGATGATACAGGACAAGCCAACTACTTCAGATGATTCCAAGGAGGTTCCACGGTGGGTTGAAATGCCAGTAATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCCGTCACTGATGCATTAAAAACTTTAAATAGTGCTCAGGTTTTCGTAAATGTTGTCCATGTTGGCGCTGGGCCTATTTCTCAATCTGATGTGGACTTAGCACAAGCTTGTGGTGCTTGCATAGTTGGATTCAATGTCAAAAGTCCACCTACTGCTCTTAGTCAGGCTGCAGCTCGTGCTGGTATCAAGATAATTTTGCACCGTGTAATTTACCACCTCTTGGAAGACATAGGAAATTTGATAATAGAGAGGGCCCCTGGGACTTCTGAAACGCACGTTGCTGGGCAAGCAGAAGTGCTGAATATCTTTGAAATCAAAGGGAGCAAATCCAAGGGACCTGATGTTAAGATAGCGGGTTGTCGTGTTATCGATGGTTCTGTGACAAGATCAGCAACCCTGAGGCTTCTTAGAAGTGGGGAAGTAGTGTTTGAAGGACTTTGTACATCTCTTAAGCGGGAGAAACAGGATGTGGATACTGTGAAAAAGGGAACTGAGTGTGGAGTAGTAATCAGCAATTGGTATGATTTCCAGATTGGAGACGTTATTCAGTGCTTGGAACAGGTCATAAGGAAGCCCCAGTTCATTAAGTCCGAAAGTGGTGCTGTTCGAATTGAGTGCTGA 2157 0.446 MAWRELGKKRIYMNFTRTLTTTPFRYAAGSNFASIFTVQSVCASARCVPDFTNQSSQGVAGFGRETKECEIRCFHASSQVWARSDGPLGLQTPKRVYVKRGGRNQLPVGAPYACRNVPATKSNPDKTIEIFEGMTLVELAKRTGRSVSSLQDILTDVGEKFQSEFELLSMDIAELVAMEAGINVKRLHSAEGAEILPRSAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHIGAFVVAMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKAGANSEKVKLQLASEGLLLEEMGGDVQVVEVSATEKIGLDNLEEALLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDMTGKLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRQRKYEENRLRNKMIQDKPTTSDDSKEVPRWVEMPVIVKADVQGTVQAVTDALKTLNSAQVFVNVVHVGAGPISQSDVDLAQACGACIVGFNVKSPPTALSQAAARAGIKIILHRVIYHLLEDIGNLIIERAPGTSETHVAGQAEVLNIFEIKGSKSKGPDVKIAGCRVIDGSVTRSATLRLLRSGEVVFEGLCTSLKREKQDVDTVKKGTECGVVISNWYDFQIGDVIQCLEQVIRKPQFIKSESGAVRIEC* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1888 718 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 494 607 IPR036925 -
Gso19g1888 718 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 197 367 IPR000795 GO:0003924|GO:0005525
Gso19g1888 718 SUPERFAMILY Translation proteins 602 702 IPR009000 -
Gso19g1888 718 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 107 709 - -
Gso19g1888 718 Gene3D Translation factors 601 703 - -
Gso19g1888 718 Gene3D - 195 369 IPR027417 -
Gso19g1888 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 367 IPR027417 -
Gso19g1888 718 CDD IF2_mtIF2_II 373 468 IPR044145 -
Gso19g1888 718 CDD mtIF2_IVc 607 696 - -
Gso19g1888 718 Gene3D Translation factors 370 486 - -
Gso19g1888 718 Gene3D - 496 598 IPR036925 -
Gso19g1888 718 SUPERFAMILY Translation proteins 371 453 IPR009000 -
Gso19g1888 718 TIGRFAM small_GTP: small GTP-binding protein domain 200 351 IPR005225 GO:0005525
Gso19g1888 718 TIGRFAM IF-2: translation initiation factor IF-2 125 703 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Gso19g1888 718 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 107 709 IPR015760 -
Gso19g1888 718 Pfam Translation-initiation factor 2 495 589 IPR023115 -
Gso19g1888 718 CDD IF2_eIF5B 201 364 - -
Gso19g1888 718 Pfam Elongation factor Tu GTP binding domain 202 358 IPR000795 GO:0003924|GO:0005525
Gso19g1888 718 Hamap Translation initiation factor IF-2 [infB]. 8 704 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1888 Gso-Chr19 47607184 47612632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1888 198 587 Eukaryotic Initiation Factors Gene Family AT1G21160 28.728 2.04e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1888 K02519 - gmx:100790572 1385.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1888 19 47607184 47612632 Gso3g1925 3 44782267 44787592 GST