Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1886 ATGGCTTCTTCTATCATAGGCGTTTCCTCCATTTACCAAACACCCCCTCTCGAACTATACCAGAGGCCAAGCACTGCTTCCACTTCCTCCGTTAGGTTGCAATCTTTAGACTCCAAGTCTCACTTCAACAACCTCCTCCGAGCCCACCGCCACTCCACTGGCCCGGGCCTCAAGCCTACACCGTCTTTCGTCCCCTCCGCCGTCGCCACCCCCAACTCCTCCCTCCTCAGCGAAGAAGCCTTCAAAGGACTTGCCCGCGAATTCGACCAAAACGACGACCAATTCACCCGCGCCTCCTCCGCCGCCGAATCCGTTAACCCCGACGAACTCGACATTTCCAAGCTCGACTTGCCCTCGCGTCTCGTTGAGTCTCTCCGGAGCCGTGGGATTACTCAACTTTTCCCCATTCAGAGAGCGGTGTTAGTACCTGCACTAGAAGGTAGAGATATCATTGCGCGAGCGAAGACCGGTACCGGAAAGACGTTAGCGTTCGGGATTCCAATTATTAAAGGCCTCACTGAAGATGAGCACGCACCTTCTCACAGGAGGTCTGGTAGGCTTCCGAGATTTTTGGTGCTTGCTCCTACGAGAGAGTTGGCGAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCACCTTACCTGAGCACTGTTTGTGTTTACGGTGGTGTTTCTTATGTTACTCAGCAGAGTGCGCTTTCGCGCGGTGTTGACGTGGTGGTTGGGACACCGGGGAGAATAATTGACTTGATAAACGGGAACAGCCTTAAGCTCAGTGAGGTTCAATATTTGGTTCTTGATGAAGCGGACCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAATGATTCTGGAGAATCTTCCATCTCAGAGGCAGAGCATGCTTTTCTCTGCTACCATGCCCAGTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAATCCACTCACAATTGATTTGGTTGGTGATGAAGAGGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATAGCAGCCACTGCCACTTCAAAGCGGACAATTCTTTCTGATCTTGTAACTGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCATTGTCATTAACAAATAGTATAATGTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCCGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGACATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACCTTCGTACATCGCTCTGGTCGTACTGGGCGTGCAGGAAAACAAGGTAATGCCATTCTGTTGTACACCAGTAGCCAGCGGAGAACGGTTAGATCCCTTGAACGTGATGTAGGCTGCAAGTTTGAATTTGTTAGTTCACCAGCTATGGAAGAGGTTTTGGAGGCATCTGCTGAGCAGGTTGTTGCCACACTTTGTGGAGTTCATCCCGAGTCTGTTCAGTTTTTCACCCCTACTGCACAGAAACTGATCGAAGAACAAGGAACAAGTGCCCTTGCAGCTGCACTTGCACAACTGAGTGGATTCTCCCGACCACCATCATCCCGGTCTCTTATCACCCATGAACAGGGATGGATTACATTGCAACTAACTCGAGATTCAGATAGTAGAAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTGCAGCTGCTGATGAAGTTGGAAAAATCCATTTAATTGCAGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCCGAGGAAATTGCTAAAGAGTTACTTAATAGGGACATACCACCTGGAAACACCATTTCCAAGATCACCAAGCTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAGGTTCTCTGATAGAGATAGAAGTAGCCGAAGAGGGTCTTCTACTTCTAGGGGAGGTTTTAGTTCTAGGGGAGGTTCTTCTTCTAGGGACCGGAGAGGTTTTAAATCCTCACGGGGATGGGATGGGGAAGACTCTGATGATGATGACTTTGGTGATCGATCTAGTTGGAGAGGTGGTAGAAATTTTAAAACTGGCAACAGCTGGTCTCGAGCAGCAGGTAGAAGCAGTGGGGATGATTGGCTAATTGGAGGTAGTAGACGATCAAGCAGGCCTTCATCATCAGACAGATTTGGAGGGGCCTGTTTTAATTGCGGAGAATCCGGGCATCGTGCATCAGATTGTCCAAACCCTTCAAACAGACGAAGCTTTTAA 2316 0.4754 MASSIIGVSSIYQTPPLELYQRPSTASTSSVRLQSLDSKSHFNNLLRAHRHSTGPGLKPTPSFVPSAVATPNSSLLSEEAFKGLAREFDQNDDQFTRASSAAESVNPDELDISKLDLPSRLVESLRSRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDEHAPSHRRSGRLPRFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEMILENLPSQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGNAILLYTSSQRRTVRSLERDVGCKFEFVSSPAMEEVLEASAEQVVATLCGVHPESVQFFTPTAQKLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSDSRRYFSARSVTGFLSDVYSAAADEVGKIHLIADERVQGAVFDLPEEIAKELLNRDIPPGNTISKITKLPPLQDDGPPSDFYGRFSDRDRSSRRGSSTSRGGFSSRGGSSSRDRRGFKSSRGWDGEDSDDDDFGDRSSWRGGRNFKTGNSWSRAAGRSSGDDWLIGGSRRSSRPSSSDRFGGACFNCGESGHRASDCPNPSNRRSF* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1886 771 MobiDBLite consensus disorder prediction 676 690 - -
Gso19g1886 771 Pfam Helicase conserved C-terminal domain 345 452 IPR001650 -
Gso19g1886 771 MobiDBLite consensus disorder prediction 621 771 - -
Gso19g1886 771 Gene3D - 336 530 IPR027417 -
Gso19g1886 771 CDD DEADc 121 319 - -
Gso19g1886 771 MobiDBLite consensus disorder prediction 646 660 - -
Gso19g1886 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 141 318 IPR014001 -
Gso19g1886 771 ProSiteProfiles Zinc finger CCHC-type profile. 749 764 IPR001878 GO:0003676|GO:0008270
Gso19g1886 771 SUPERFAMILY Retrovirus zinc finger-like domains 733 768 IPR036875 GO:0003676|GO:0008270
Gso19g1886 771 Gene3D - 721 770 - -
Gso19g1886 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 492 IPR001650 -
Gso19g1886 771 MobiDBLite consensus disorder prediction 707 721 - -
Gso19g1886 771 Pfam DEAD/DEAH box helicase 134 307 IPR011545 GO:0003676|GO:0005524
Gso19g1886 771 SMART c2hcfinal6 748 764 IPR001878 GO:0003676|GO:0008270
Gso19g1886 771 SMART ultradead3 129 335 IPR014001 -
Gso19g1886 771 Pfam Zinc knuckle 748 764 IPR001878 GO:0003676|GO:0008270
Gso19g1886 771 Gene3D - 111 322 IPR027417 -
Gso19g1886 771 SMART helicmild6 372 452 IPR001650 -
Gso19g1886 771 MobiDBLite consensus disorder prediction 661 675 - -
Gso19g1886 771 CDD GUCT_Hera 546 625 - -
Gso19g1886 771 PANTHER - 32 761 - -
Gso19g1886 771 CDD SF2_C_DEAD 332 461 - -
Gso19g1886 771 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 32 761 - -
Gso19g1886 771 Pfam GUCT (NUC152) domain 539 638 IPR012562 GO:0003723|GO:0004386|GO:0005524
Gso19g1886 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 473 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1886 Gso-Chr19 47580780 47586308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1886 65 474 Eukaryotic Initiation Factors Gene Family AT1G72730 35.561 1.68e-64 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1886 - - gmx:100789516 1390.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1886 19 47580780 47586308 Gso19g1886 19 47580780 47586308 ECH
Gso19g1886 19 47580780 47586308 Gso3g1921 3 44755426 44761147 GST
Gso19g1886 19 47580780 47586308 Gso10g1296 10 38998533 39004927 PCT
Gso10g1296 10 38998533 39004927 Gso19g1886 19 47580780 47586308 PCT