Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1876 ATGGCGTCTCCATTATCAGCTCAATTGGTTCAATGTCAGAACTCACTTCCACCTCTTCAGGGTAATTTTAGCCAAGATGTGTCTAAGGTTCAAAGGTCGCGTGTGGTATGTTACGGTACCAGATCACCGCTTGGTTATTATGGTAAAGCATTGACATCAAGATCACATAACGCCCTGAGGTTTTCTGTCACGCGACAATCTGAAGCACGGTCAATTGGATATAGGAGAATGACATGTGTCAATGCTGCAGACAATGTTGTAGAGCTTCAAGCCAAGGTGACAACCAAGTGTTTCTTTGATGTAGAAGTTGGGGGTGAACCTGTGGGCAGGATTGTTTTGGGCCTATTTGGAGAGGTTGTTCCTAAAACCGTTGAAAATTTCCGTGCTTTGTGCACAGGTGAGAAAGGATATGGTTACAAAGGAAGCTCCTTCCATCGTATAATCAAAGATTTCATGATTCAGGGAGGAGACTTTACAGAAGGAAATGGAACTGGTGGAATTAGTATCTATGGTCCTAGTTTTAAAGATGAGAGTTTTGCCTTAAAGCATGTCGGTCCTGGAGTTCTGAGCATGGCAAATGCTGGTCCTAATACTAATGGGAGTCAATTTTTCATTTGCACTGTAAAGACTCCATGGCTAGACAATCGTCACGTTGTATTTGGACATATCATTGATGGAATGGATGTTGTGAAGACACTTGAATCCCAGGAGACGAGTAGGTTAGATGTCCCTCGAAAGCCTTGCAGAATTGTTAATTGCGGAGAACTGCCTATAGAGGGTTGA 783 0.4304 MASPLSAQLVQCQNSLPPLQGNFSQDVSKVQRSRVVCYGTRSPLGYYGKALTSRSHNALRFSVTRQSEARSIGYRRMTCVNAADNVVELQAKVTTKCFFDVEVGGEPVGRIVLGLFGEVVPKTVENFRALCTGEKGYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGPSFKDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHIIDGMDVVKTLESQETSRLDVPRKPCRIVNCGELPIEG* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1876 260 CDD cyclophilin_ABH_like 96 254 - -
Gso19g1876 260 Gene3D - 81 259 IPR029000 -
Gso19g1876 260 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 50 259 - -
Gso19g1876 260 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 139 156 IPR020892 GO:0003755|GO:0006457
Gso19g1876 260 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 50 259 - -
Gso19g1876 260 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 98 255 IPR002130 GO:0000413|GO:0003755
Gso19g1876 260 SUPERFAMILY Cyclophilin-like 89 256 IPR029000 -
Gso19g1876 260 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 99 254 IPR002130 GO:0000413|GO:0003755
Gso19g1876 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 130 IPR002130 GO:0000413|GO:0003755
Gso19g1876 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 144 156 IPR002130 GO:0000413|GO:0003755
Gso19g1876 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 187 202 IPR002130 GO:0000413|GO:0003755
Gso19g1876 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 202 214 IPR002130 GO:0000413|GO:0003755
Gso19g1876 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 215 230 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1876 Gso-Chr19 47475043 47477559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1876 109 253 U-box Gene Family AT5G67530 43.836 1.54e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1876 K03768 - gmx:100785805 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1876 19 47475043 47477559 Gso3g1912 3 44668433 44671544 GST