Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1874 ATGAGAATGAAGAAGCTGATTTTAATACTCATAGCAGCATTTACCTTCGTTTCTGTGGCTAGATCTGCGGCTGATCATTTCTTCGAAAACGATGGCGTTTCACTGGCAGTTGCAGCAACGCCCGGACCTCCACCTCTCATGGTCCCCCTCACTCTTATTCAGGGAGCTGCTTCCAAAGGAGCCGTCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGATCTGGGGCAAATAGTTGGCTCATTCAATTGGAGGGAGGAGGATGGTGTAATACCATCAGAAGTTGTGTCTTTAGAAAAACTACTCGTCGTGGTTCCTCAAAATACATGGAAAAACAACTAGCATTCACAGGGATATTGAGCAATAAAGCTGAAGAAAACCCTGATTTCTTTAACTGGAACAGAGTTATAGTACGTTACTGTGATGGGGCATCTTTCAGTGGAGATAGTCAAAATGAGGCTGCACAGCTTCAATTCCGAGGACAAAAAATATGGCAAGCTGCAATGCAGGAATTATTGTTCAAGGGAATGCAGAAGGCCAACCAGGCCCTTTTGTCCGGATGCTCTGCGGGTGGTCTGGCATCTATAATACATTGTGATGAGTTCCGGAGCTTGTTTCCTACATCTACCAAAGTGAAATGTTTGAGTGATGCAGGGTTTTTCCTAGATGCGGTTGACATATCTGGGGGTCACACACTGAGGAATCTGTTTGGAGGTGTAGTTAAATTACAGGAGGTGCAAAAAAATCTGCCAAACAGTTGTCTCAACCAACTGGACCCAACTTCGTGCTTTTTTCCTCAGAATTTGATCAACCATGTTGAAACTCCATTGTTTCTACTCAATGCAGCTTATGATGCATGGCAGGTCCAAGAAAGTTTGGCCCCACATTCAGCAGATCCCCATGGCTCTTGGAATGATTGTAAATCAAATCATGCACGCTGTAACTCATCTCAAATTCAGTTCCTCCAAGACTTCAGAAATCAAATGCTAAATGATGTGAAAGGCTTCTCAGGGACATCTCAAACTGGGTTATTCATAAATTCTTGTTTTGCTCATTGCCAGTCTGAGAGACAAGATACATGGTTTGCTGATGACTCTCCACTAATTAACAACATGCCAATTGCAATTGCTGTTGGAGACTGGTTTTTTGATCGGAAAACTGTCAAAGCTATCGACTGTGCTTACCCCTGTGACAATACATGCCATAATCTGGTCTTCAATGATGATGACACACCTACCAATACCATGACCATGATATATTCCCGCTCCACAAGGCTGACTTTTAGTAGTGGCCTATATATGCTAAGTATTTTATTGCCATTTACATGTTCCTAG 1347 0.4298 MRMKKLILILIAAFTFVSVARSAADHFFENDGVSLAVAATPGPPPLMVPLTLIQGAASKGAVCLDGTLPGYHFHPGFGSGANSWLIQLEGGGWCNTIRSCVFRKTTRRGSSKYMEKQLAFTGILSNKAEENPDFFNWNRVIVRYCDGASFSGDSQNEAAQLQFRGQKIWQAAMQELLFKGMQKANQALLSGCSAGGLASIIHCDEFRSLFPTSTKVKCLSDAGFFLDAVDISGGHTLRNLFGGVVKLQEVQKNLPNSCLNQLDPTSCFFPQNLINHVETPLFLLNAAYDAWQVQESLAPHSADPHGSWNDCKSNHARCNSSQIQFLQDFRNQMLNDVKGFSGTSQTGLFINSCFAHCQSERQDTWFADDSPLINNMPIAIAVGDWFFDRKTVKAIDCAYPCDNTCHNLVFNDDDTPTNTMTMIYSRSTRLTFSSGLYMLSILLPFTCS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1874 448 PANTHER NOTUM-RELATED 2 424 IPR004963 GO:0016787
Gso19g1874 448 PANTHER PECTIN ACETYLESTERASE 2 424 - -
Gso19g1874 448 Pfam Pectinacetylesterase 46 391 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1874 Gso-Chr19 47457605 47463558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1874 42 432 Carbohydrate Esterase AT3G62060 70.663 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1874 K19882 - gmx:100785270 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1874 19 47457605 47463558 Gso3g1910 3 44653641 44659395 GST
Gso19g1874 19 47457605 47463558 Gso2g0058 2 696808 701431 PCT
Gso19g1874 19 47457605 47463558 Gso10g1283 10 38851771 38861676 PCT
Gso2g0058 2 696808 701431 Gso19g1874 19 47457605 47463558 PCT
Gso10g1283 10 38851771 38861676 Gso19g1874 19 47457605 47463558 PCT