Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1872 ATGGGAAGGCACTCTTGCTGTTACAAACAGAAACTTAGGAAGGGTCTTTGGTCACCAGAAGAAGATGAAAAACTTCTGAGGCATATTACAAAGTACGGTCATGGATGTTGGAGCTCAGTTCCTAAGCAAGCAGGTTTGCAGAGGTGCGGCAAGAGCTGCAGGCTTAGGTGGATCAATTACTTAAGGCCTGATTTGAAGAGAGGTACATTCTCACAAGAGGAGGAAACTCTCATCATTGAACTTCATGCAGTGCTAGGGAACAGATGGTCTCAAATTGCAGCTCAATTGCCAGGGAGGACCGACAATGAAATAAAGAATCTGTGGAATTCTTGCCTAAAGAAGAAACTGAGGCAAAGAGGAATAGACCCTGTGACACATAAGCCACTGTCAGAGGTTGAGAATGGGGAAGAGGACAAAACAAGAAGCCAAGAGTTATCCAATGAATTGAACCTCCTGAATTCAGAGAGCTTCAAGTCAGATGAAGGGTCCTATGAGCAGAGAGCATCATCATCAATTGCCCCCAAAGCCTATGAGATGGAAGGCTCTTGCAGCTCCAAGATTAACACCACCAAAAATGACACCAACTTGATGTCCAATTGTTCCAACAAAGACATGTTCTTAGACAGCTACACCACTAGTTGCCAACCCTCAGATTTGATGGGAAATTACCCTCTTCAAATCACTGACACTCTCCCAACCAATTCAAACTCTTGCCATTGGTTCAGCCAAACTGCAAGACCCTTTGATATGAACTCTGAGTTTACAATCACTTCCAATGTTATGTCCATTCTTCCACCTACAACAACCTCATTTCTCCCAAGCACTTCTTTTTGCTACAAGCCATCACTTGGTGTCCCTTCAGAAGATATTTCAACAGCATCTTTTGCTTTGAATGGTCCCAATTACTGGGAAGCCAGTGCCTCCAACAACAGCAATGGAAGCAACAACACAAGTGATGGCAGCAGAGAGTTGACAACTACAAGTAGCAAGAACAGTGTACTCTCTTCTTGGGGATTGACAGAAGAAACAAAGTGGTCTGAGTACCTCCAAAACCCAATGCTAATGCTGGCAGCTCCTGAATCATTGTGCAACCAAATTAGGCCAGCCACACATTTGGTACCTGATAACACTTTAGGGTCAATAATAGTGCCTGATTCCAAGGAGCAACAACAACAACAACAATCTCAAAATTCTAGCATCTTCTCCAAGGACATGCAGAAGCTAACAGCAGCCTTTGGACATATATAG 1248 0.4367 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEETLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEEDKTRSQELSNELNLLNSESFKSDEGSYEQRASSSIAPKAYEMEGSCSSKINTTKNDTNLMSNCSNKDMFLDSYTTSCQPSDLMGNYPLQITDTLPTNSNSCHWFSQTARPFDMNSEFTITSNVMSILPPTTTSFLPSTSFCYKPSLGVPSEDISTASFALNGPNYWEASASNNSNGSNNTSDGSRELTTTSSKNSVLSSWGLTEETKWSEYLQNPMLMLAAPESLCNQIRPATHLVPDNTLGSIIVPDSKEQQQQQQSQNSSIFSKDMQKLTAAFGHI* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1872 415 MobiDBLite consensus disorder prediction 122 144 - -
Gso19g1872 415 SMART sant 13 63 IPR001005 -
Gso19g1872 415 SMART sant 66 114 IPR001005 -
Gso19g1872 415 MobiDBLite consensus disorder prediction 122 171 - -
Gso19g1872 415 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso19g1872 415 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso19g1872 415 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso19g1872 415 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso19g1872 415 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso19g1872 415 PANTHER HOMEODOMAIN-RELATED 1 409 - -
Gso19g1872 415 CDD SANT 17 61 IPR001005 -
Gso19g1872 415 Gene3D - 68 145 - -
Gso19g1872 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso19g1872 415 PANTHER MYB DOMAIN PROTEIN 55 1 409 - -
Gso19g1872 415 MobiDBLite consensus disorder prediction 306 327 - -
Gso19g1872 415 MobiDBLite consensus disorder prediction 145 170 - -
Gso19g1872 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso19g1872 415 Gene3D - 11 67 - -
Gso19g1872 415 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1872 Gso-Chr19 47436398 47438301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1872 1 156 MYB Transcription Factor Family AT4G01680 84.615 2.51e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g1872 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1872 K09422 - gmx:100037467 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1872 19 47436398 47438301 Gso3g1908 3 44632096 44634101 GST
Gso19g1872 19 47436398 47438301 Gso2g0060 2 709230 711272 PCT
Gso19g1872 19 47436398 47438301 Gso10g1282 10 38841750 38843934 PCT
Gso2g0060 2 709230 711272 Gso19g1872 19 47436398 47438301 PCT
Gso10g1282 10 38841750 38843934 Gso19g1872 19 47436398 47438301 PCT