Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1870 ATGATGATTCAGAAGATGTTTGACTCCACCCGTTCTGGTATGACAAGAAGCTCCTCCCATGTAGCCTCCATTAATGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGATTGTTGTACGAGGAGGTTCATCATCAAACAGATCACGAAAGACAAACGAGGAAAGAATACATGAAGATGCCAGCATTAACAAAAGAACTAGGTTAAACCCATTATACTCACTTGAAGATCACTTTCTACCACAAAGGGACTCTGACATGAGCTCTTCACACCAAAGCAATAATGGCCAAGATTCGTGTCAATCCTCCGAAAGCAAGAATTCCTGCAAGCTTCATGAAGAATTTGCAAACTTACTTAAGCCCGTTACCACAGGCAATAGTCACTTACAACAGTGCTTACCTTCATCTCCGCTCAAGAAACAAAGAACAGATTCAACCCAAACACCAAGACCAGCAAAAGTGAACTTCTCCAACTTTTCAATACCTGCAGTGTTTCTCAAATCTACTACTACTACTACTACTAATAATTATCAGGGAAACAGTGCAACTCAACAGACAAAAAATCATTCATCTCCAGCAAGAGTGGAGGAGATTGAAGCGCTCAAGGTTGACAAATCAGCGAAAGAAACACAGTGTTTTCAGAAGCAAACATCATTAACTGTTGAAAGAAGCACAAAATTACCAACCCCAGCGGTTGATGAACACTCTGAAGCTGCTGGTCATAACTGTGGTGTTCTTGGAATTCACAGATCCCAAGGTCAAACCTCAACCTCAGAAGCACTTAGAGCCAAAGCAAAAGCTTATAATAATAATAATATTAACATGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCTTGGTTTCAGGAAACATGAGGACACTGATGACTCAACGTATTTAAGTGATAATGATGGAGAGCCTGAAGATATGGTAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACCCTGAGGTTCATAACTTATCTGAGAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGACCTCATTCCCAACTGTAATAAGGTGGACAAAGCATCAATGCTAGACGATGCCATCGACTATCTGAAGACCCTAAAGCTTCAGTTACAGGCAAATTTTCAGATAATGTCAATGGGAAGTGGGTTATGGCCACTCATGATGGGATTCAGGCCACCACAGCTACCTATTCCACCACTTTCTGCTATCACAGACAGCAGACTTATTCAGATGTTTGGTTCCCCAAACCAAATACCACCCATGCCAATGCCTCATGCACCTTTCTTCCCTATCATTGGAAATTCTGCCACACAATCACACTTGGCTAATAACACCACCACCACAGCTGCAGCTACCACCAACTTGGCAGAACATTTAGCTAATTCTCTACATGGAAATGCAACAAAGCTAGCGCCACCAAGTCAGATTTCCTTTCAACACCACCACACCTCTACTAGTACTCCTACACTAGCTACCCCTTTCATTTTTCCACAAAAATAG 1557 0.4213 MMIQKMFDSTRSGMTRSSSHVASINDNDFLELVWENGEIVVRGGSSSNRSRKTNEERIHEDASINKRTRLNPLYSLEDHFLPQRDSDMSSSHQSNNGQDSCQSSESKNSCKLHEEFANLLKPVTTGNSHLQQCLPSSPLKKQRTDSTQTPRPAKVNFSNFSIPAVFLKSTTTTTTNNYQGNSATQQTKNHSSPARVEEIEALKVDKSAKETQCFQKQTSLTVERSTKLPTPAVDEHSEAAGHNCGVLGIHRSQGQTSTSEALRAKAKAYNNNNINMCHEPLLASSSVCSLGASNDPNLGFRKHEDTDDSTYLSDNDGEPEDMVKQDREGNRVKRSRNPEVHNLSEKKRREKINKKMRTLKDLIPNCNKVDKASMLDDAIDYLKTLKLQLQANFQIMSMGSGLWPLMMGFRPPQLPIPPLSAITDSRLIQMFGSPNQIPPMPMPHAPFFPIIGNSATQSHLANNTTTTAAATTNLAEHLANSLHGNATKLAPPSQISFQHHHTSTSTPTLATPFIFPQK* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1870 518 MobiDBLite consensus disorder prediction 317 345 - -
Gso19g1870 518 SMART finulus 342 391 IPR011598 GO:0046983
Gso19g1870 518 MobiDBLite consensus disorder prediction 83 106 - -
Gso19g1870 518 MobiDBLite consensus disorder prediction 42 64 - -
Gso19g1870 518 CDD bHLH_AtPIF_like 336 402 - -
Gso19g1870 518 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 514 - -
Gso19g1870 518 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 395 IPR036638 GO:0046983
Gso19g1870 518 MobiDBLite consensus disorder prediction 49 64 - -
Gso19g1870 518 MobiDBLite consensus disorder prediction 127 155 - -
Gso19g1870 518 MobiDBLite consensus disorder prediction 86 106 - -
Gso19g1870 518 MobiDBLite consensus disorder prediction 497 518 - -
Gso19g1870 518 Pfam Helix-loop-helix DNA-binding domain 340 385 IPR011598 GO:0046983
Gso19g1870 518 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Gso19g1870 518 PANTHER TRANSCRIPTION FACTOR PIF3 1 514 IPR044273 GO:0003700|GO:0006355
Gso19g1870 518 Gene3D - 332 394 IPR036638 GO:0046983
Gso19g1870 518 MobiDBLite consensus disorder prediction 298 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1870 Gso-Chr19 47397076 47399930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1870 134 418 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 36.455 6.41e-30 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso19g1870 HLH 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1870 K12126 - gmx:100784724 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1870 19 47397076 47399930 Gso3g1906 3 44604209 44607156 GST
Gso19g1870 19 47397076 47399930 Gso2g0062 2 738533 740613 PCT
Gso19g1870 19 47397076 47399930 Gso10g1280 10 38788099 38790599 PCT
Gso2g0062 2 738533 740613 Gso19g1870 19 47397076 47399930 PCT
Gso10g1280 10 38788099 38790599 Gso19g1870 19 47397076 47399930 PCT