Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1869 ATGGGCAAACCCGCTAGTTCTTCTTCCTCCTCTATTAGCAGCACCACCAACCGTCACCTCCTCCTTTCAACCGCATCTTCTCTCACTCAAGAACTTCCCACTGATCTTAGGCTTGGACTCGGCATTTCCGCCACTCAACATTTTGCCTCTTCTATTTCAAGGGGGCAATGGCAACAATCACACCACCCTTTTGTGAACATTTATTCACAAGTTCCTGCTGAAGTGAATGATTGCAGCAACGATCATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGGATTCCAATCGGAAGGAAGCTCAATATACTAGCTCATGGAGGCTACTATGAGTTAGTCAGGACTCTTGAACACATGTTTGACACTACCATTCTTTGGGGAACAGAAATGAATGGAGTGCAACCAGAGAGATGCCATGTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCGACGGTGAAGAGGTTGAAGATCACAAGGGTAGACACATTCGGGTGTTAA 534 0.4569 MGKPASSSSSSISSTTNRHLLLSTASSLTQELPTDLRLGLGISATQHFASSISRGQWQQSHHPFVNIYSQVPAEVNDCSNDHSSFFVKVYMEGIPIGRKLNILAHGGYYELVRTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1869 177 ProSiteProfiles PB1 domain profile. 84 174 IPR000270 GO:0005515
Gso19g1869 177 SUPERFAMILY CAD & PB1 domains 80 169 - -
Gso19g1869 177 Pfam AUX/IAA family 79 171 IPR033389 -
Gso19g1869 177 Gene3D - 78 176 - -
Gso19g1869 177 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 176 IPR003311 GO:0005634|GO:0006355
Gso19g1869 177 PANTHER AUXIN-INDUCED PROTEIN 2 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1869 Gso-Chr19 47383583 47384809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1869 72 169 B3 DNA Binding Superfamily AT4G23980 35.714 4.21e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso19g1869 AUX_IAA 2.2e-27 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1869 K14484 - gmx:100783140 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1869 19 47383583 47384809 Gso3g1905 3 44592764 44594072 GST
Gso19g1869 19 47383583 47384809 Gso2g0064 2 756980 758306 PCT
Gso19g1869 19 47383583 47384809 Gso10g1277 10 38754481 38756104 PCT
Gso2g0064 2 756980 758306 Gso19g1869 19 47383583 47384809 PCT
Gso10g1277 10 38754481 38756104 Gso19g1869 19 47383583 47384809 PCT