Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1867 ATGGACAACCCACACCACCGTCAATTGACCTTCTTCCTCAGCCATAGTATAGATCACACAGATCCTCCTTCTGTCAAAGAAATGGATTTCTTCTCAACTTCATCGGCACCTGATCATAAAAATAACACTAGTAGCAGTGATACCAATGATGATTATCAGAAGCGTGATGATCAACATGACACTCATGATCGCCATGGAAGCATCACCGCCGATGGATCACCAACACGCGCCACTGACCACCATGTAAACACTGGACTCAATTTAACTTGTGCAAGTGCTGGAATGAAAAAAGCAGACAATAGTGAAAATCCTGAAACTGAGCTGAGTTCTCTTGAAAACCAATTGGGGAAACTACAAGAAGAGAATAGCAAGTTAAGAAGTGTGCTGGACCAGATAACCAAAAACTATGCCCAACTACAAGCTCAGTTGTTCAACGCCTTGCAAAAACAAAAGCTTCCTAAGAATGTGGAAACAAAAATTGTGGACCCAGGAGCAAGCACGAAATTAGACGTGGTCAATAATGCATCGGTTTCGGATGAAAAGACTGATCAAGATGTATCGGTTTATCGTTCAAACAACGCGGAGGCTTGTCCTGATGCTGCAGAAGATGTTCTTGACCGGTCCTCTTCACAGAGTTGGGGATCATCCAAGTTAGAGGAACAACCCAAAACTGCAGAACAACTTCCTGCAGAACAGATTCCTCTCAGAAAAGCCAGGGTTTCCGTCCGTGCTAGATCAGAAGCTCCCATGATAAGCGATGGATGTCAGTGGAGGAAATATGGACAAAAAATGGCCAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGCACTATGGCTGTAGGATGCCCGGTCCGAAAACAGGTTCAAAGATGTGCAGATGACAAAGCAGTGTTGATAACAACCTACGAAGGCAATCACAACCACCCTTTGCCGCCGGCCGCCACCGCCATGGCAAATACTACGTCAGCAGCCGCAGCCATGCTGCTATCAGGTTCGGCAGCCCCAAGCAAGGAAGCGCTAACAAACTCTGCAGGATATTACTCTTCTTCTTCAATTCCCTATGCTTCAATGGCAACCCTATCAGCTTCAGCTCCATTCCCAACCATCACTCTCGACTTGACCCAAAACCCCAACAACGCCATGCAGCTGCACCGAGTACCAGCAGGCCATGGCGCCACGTTCCCTCTGCCACTGCATGCGGCAGCTGCTGGTCCCCACCTACTAGGTCACCCCTTGTTCTTCCAACAGAAGCTTCCACCGGCAGCATTAATGCCCCTTCTTCAACGACAACCTTCGTCGTCGATGGTCGAAACGGTTAGTGCAGCCATTGCTTCGGATCCGAACTTCACTGCAGCTTTGATGGCAGCAATCTCATCAATCATTGGAGTACCAAGAAGCAGTGATGATAATAACAATGGAAATGGTGCTATTCCAGGGTCACCACAGCTTCCTCAGTCATGCACTACTTTCTCCACCAACTAG 1485 0.4781 MDNPHHRQLTFFLSHSIDHTDPPSVKEMDFFSTSSAPDHKNNTSSSDTNDDYQKRDDQHDTHDRHGSITADGSPTRATDHHVNTGLNLTCASAGMKKADNSENPETELSSLENQLGKLQEENSKLRSVLDQITKNYAQLQAQLFNALQKQKLPKNVETKIVDPGASTKLDVVNNASVSDEKTDQDVSVYRSNNAEACPDAAEDVLDRSSSQSWGSSKLEEQPKTAEQLPAEQIPLRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCADDKAVLITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSAAPSKEALTNSAGYYSSSSIPYASMATLSASAPFPTITLDLTQNPNNAMQLHRVPAGHGATFPLPLHAAAAGPHLLGHPLFFQQKLPPAALMPLLQRQPSSSMVETVSAAIASDPNFTAALMAAISSIIGVPRSSDDNNNGNGAIPGSPQLPQSCTTFSTN* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1867 494 Pfam WRKY DNA -binding domain 253 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g1867 494 ProSiteProfiles WRKY domain profile. 246 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g1867 494 SUPERFAMILY WRKY DNA-binding domain 244 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso19g1867 494 MobiDBLite consensus disorder prediction 16 81 - -
Gso19g1867 494 MobiDBLite consensus disorder prediction 467 494 - -
Gso19g1867 494 MobiDBLite consensus disorder prediction 27 48 - -
Gso19g1867 494 Gene3D WRKY domain 236 313 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso19g1867 494 Coils Coil 101 149 - -
Gso19g1867 494 MobiDBLite consensus disorder prediction 49 69 - -
Gso19g1867 494 MobiDBLite consensus disorder prediction 199 232 - -
Gso19g1867 494 MobiDBLite consensus disorder prediction 205 222 - -
Gso19g1867 494 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 21 494 - -
Gso19g1867 494 SMART WRKY_cls 251 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g1867 494 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 21 494 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1867 Gso-Chr19 47352136 47356956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1867 107 462 WRKY Transcription Factor Family AT4G04450 43.921 4.20e-88 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso19g1867 WRKY 3.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1867 - - gmx:100783661 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1867 19 47352136 47356956 Gso3g1904 3 44571104 44575457 GST
Gso19g1867 19 47352136 47356956 Gso2g0066 2 772153 776661 PCT
Gso19g1867 19 47352136 47356956 Gso10g1276 10 38732731 38737770 PCT
Gso2g0066 2 772153 776661 Gso19g1867 19 47352136 47356956 PCT
Gso10g1276 10 38732731 38737770 Gso19g1867 19 47352136 47356956 PCT