Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1861 ATGTTCTCTTTCCTTCTTTTGTTTTCTGCCATGGAAGACGAGCCATTTCTCACTACCACTTCCCAACCCATCGCCGATTGCCTTCTTCCATCTTCCAAGTCCTTCAACGACGTCACCACCACACGCGCGCGTGACGTCGCCGCCGCCGCCGCCGAGGAGATTCAATCCGAACAACAACAACCTCCCAAGAAGAAAAAACTGAGCCGCTGCAAGACGGCACCTGCGATGGTCACCATGCGAGACCTCAAACCTAAGACACCCCAACTCCCCAAACCTCAATCAAGTTCCATAATTCGACAAGGCATGTGGTTACTCGCCGTGTACCTCTCCATAGGAGTAGTCATATACTCCTTCAACAGGGACCGTTTTTCCGGCATCGAAACACACCCTGTGGTCGACGCACTCTACTTTTGTATAGTCACCATGTGTACCATAGGTTACGGAGACATAGCGCCGTTAACCCCATTCACCAAAATCTTCGCTTGCGCTTTTGTGTTGGTGGGGTTTGGGTTCATAGACATACTCCTCAGCGGGCTCGTGAACTTCGTATTGGATTTGCAAGAGAACATGATCCTAACGGGTCTGCAAATGGGTGCGAGTGAAAGGGAAGGTTTTTCTGCTCGGAATTACATCGTTGATGTGGCGAAGGGAAGGATGAGGATCAGGTTGAAGGTTGGTTTGGCGCTTGGGGTTGTGGTGATGTGTATTGGGATTGGGAGTTTGGTGTTGTACTTTGTGGAAGGGTTGGATTGGGTTGATTCGATTTACTTGTCGGTTATGTCTGTCACAACGGTTGGGTATGGGGACCGAGCCTTTAAGACGCTTCCTGGTCGTTTGTTTGCGGCTATTTGGTTGCTCTTTTCTACTCTCATGGTGGCTCGGGCTTTTCTCTATTTGGCTGAGGCTAGAATCGATAGAAGGCATCGGAGAATGGCTAAGAAGGTTTTGCATAGGGAAATTACCGTCCAGGATTTGCTTGCTGCTGATATCAACAACACTGGTTTCATTAGCAAGTCAGAGTATGTAATCTTCATGCTGAAAGAGATGGGTAAAATACAGGAAAAAGATGTGTTGCAAATTTGTGACCAATTCAGGAAGCTTGACCCCTCTAACTGTGGGAAGATAACACTACCTCATCTCTTGGGGGGCAGTTTATGA 1158 0.4827 MFSFLLLFSAMEDEPFLTTTSQPIADCLLPSSKSFNDVTTTRARDVAAAAAEEIQSEQQQPPKKKKLSRCKTAPAMVTMRDLKPKTPQLPKPQSSSIIRQGMWLLAVYLSIGVVIYSFNRDRFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPFTKIFACAFVLVGFGFIDILLSGLVNFVLDLQENMILTGLQMGASEREGFSARNYIVDVAKGRMRIRLKVGLALGVVVMCIGIGSLVLYFVEGLDWVDSIYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRMAKKVLHREITVQDLLAADINNTGFISKSEYVIFMLKEMGKIQEKDVLQICDQFRKLDPSNCGKITLPHLLGGSL* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1861 385 PANTHER TWO-PORE POTASSIUM CHANNEL 4-RELATED 47 380 - -
Gso19g1861 385 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 47 380 IPR003280 GO:0005267|GO:0016020|GO:0071805
Gso19g1861 385 PRINTS Two pore domain K+ channel signature 140 168 IPR003280 GO:0005267|GO:0016020|GO:0071805
Gso19g1861 385 PRINTS Two pore domain K+ channel signature 263 272 IPR003280 GO:0005267|GO:0016020|GO:0071805
Gso19g1861 385 Gene3D - 78 197 - -
Gso19g1861 385 Gene3D - 207 328 - -
Gso19g1861 385 SUPERFAMILY EF-hand 325 379 IPR011992 -
Gso19g1861 385 Pfam Ion channel 104 183 IPR013099 -
Gso19g1861 385 Pfam Ion channel 232 301 IPR013099 -
Gso19g1861 385 ProSitePatterns EF-hand calcium-binding domain. 329 341 IPR018247 -
Gso19g1861 385 SUPERFAMILY Voltage-gated potassium channels 98 188 - -
Gso19g1861 385 SUPERFAMILY Voltage-gated potassium channels 216 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1861 Gso-Chr19 47297034 47299687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1861 63 385 Ion Channels AT4G01840 69.605 3.50e-162 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1861 K05389 - gmx:100780438 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1861 19 47297034 47299687 Gso3g1898 3 44499280 44503605 GST