Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1858 ATGTCTGGAAAGGTAATTATCTCGGCTGTTTCTCTCATCCTGGTGGTTGGAGTGGCCATAGGTGTGGTGGTGGCCGTCAACAAGAAGGGCGAGGATCCCACACTTCAATCTCAACAAAAATCAGTAGGGGTTATCTGCCAAAACACTGATGACCAGAAGCTCTGCCACGAAACCCTAAGCTCCGTGAAGGGCATGGACACCGCTGATCCAAAGGCTTACATCGCCAAGGCGGTGAAAGCCACCATGGACAGCGTGACCAGGGCCTTCAACATGAGTGATAGGCTCAGTACCGAGTACGGAGGCAACGATAACGGAACCAAGATGGCCCTTGATGATTGCAAGGACCTCTTGCAATCCGCTATCGAGAGCCTCCAACTCAGCATTGACATGGTTCACAACAACAACTTGCAGGCCGTGCATAACCAACAGGCTGACTTCAAGAACTGGCTCAGCGCTGTTATCTCGTACCAACAGGCCTGCATGGAGGGTTTTGACGATGGCAAAGAAGGTGAGAAGAAGATCAAGGAGCAGTTTCATACCGAGACCTTGGACAATGTTCAGAAACTCACTGGCATCACCCTTGACATTGTGAGTGGTTTGTCCAACATCCTCGAGAAGTTCGGGTTGAAGTTTAATCTTAAACCCGCGTCTCGCCGTCTTCTCGGCAAGGATGGGTTGCCCACTTGGTTCTCTGCTGCTGATCGTAAGCTTTTGGGTCGTGGATGGAGATCACGTGTCAAGCCCAATGTTGTGGTTGCCCAGGATGGCACTGGTCAGTTCAAAACCGTTGCCGATGCTATTGCTTCCTACCCAAAGGATAACAAAGGTAGATACATTATCTACGTTAAGGCTGGTGTCTATGACGAGTACATCACCGTTCCCAAGAGTTCAAAGAACATTCTCATGTACGGTGATGGCCCTGCTAAGACCATCATCACCGGTCGCAAGAACTTCGTCGATGGTGTCAAGACCATGCAAACTGCCACTTTCGCCAACACTGCAGAAGGGTTCATTGCCAAGGCAATGACATTCCAGAACACTGCCGGTGCTGAGGGACACCAAGCCGTTGCATTCAGGAACCAAGGAGACATGTCCGCTCTCGTTGGTTGCCACATCTTGGGTTACCAAGACACCTTGTACGTCCAGACCAACAGGCAATTCTACCGCAACTGCGTCATCTCCGGCACAGTCGACTTCATCTTCGGCACCTCCTCCACCGTGATCCAGCACTCCGTTATCATCGTGAGGAAGCCCCTGGACAACCAGTTCAACACAGTCACCGCCGACGGAACATCCCAGAAGAACATGGCTACAGGAATCGTGATCCAGGGTTGCAACATCGTCCCAGAAGCCGAACTTTTCCCTACAAGGTTCCAAGTGAAGTCATACCTTGGAAGGCCATGGAAGCAATTCTCAAGGACGGTTGTGATGGAATCCACCGTGGGTGACTTCCTTCACCCCGAAGGATGGTGCCCATGGGCCGGTGAACACTTCGAAGACACCTTGTACTATGCTGAATACAACAACGATGGACCTGGTGCCAACGTTAACGGAAGGATCAAGTGGAAGGGTTACCGTGGTCTTATTAGCCGCGAAGAAGCTACCCAATTCACCCCTGCCCAGTTCCTACAGGCTGGAGCCAACGGTGGAAGCGACTGGTTGAAAGCTCTCCGTGTTCCTCACGCACTTAGCTTCATGAAGGCTTAA 1707 0.5149 MSGKVIISAVSLILVVGVAIGVVVAVNKKGEDPTLQSQQKSVGVICQNTDDQKLCHETLSSVKGMDTADPKAYIAKAVKATMDSVTRAFNMSDRLSTEYGGNDNGTKMALDDCKDLLQSAIESLQLSIDMVHNNNLQAVHNQQADFKNWLSAVISYQQACMEGFDDGKEGEKKIKEQFHTETLDNVQKLTGITLDIVSGLSNILEKFGLKFNLKPASRRLLGKDGLPTWFSAADRKLLGRGWRSRVKPNVVVAQDGTGQFKTVADAIASYPKDNKGRYIIYVKAGVYDEYITVPKSSKNILMYGDGPAKTIITGRKNFVDGVKTMQTATFANTAEGFIAKAMTFQNTAGAEGHQAVAFRNQGDMSALVGCHILGYQDTLYVQTNRQFYRNCVISGTVDFIFGTSSTVIQHSVIIVRKPLDNQFNTVTADGTSQKNMATGIVIQGCNIVPEAELFPTRFQVKSYLGRPWKQFSRTVVMESTVGDFLHPEGWCPWAGEHFEDTLYYAEYNNDGPGANVNGRIKWKGYRGLISREEATQFTPAQFLQAGANGGSDWLKALRVPHALSFMKA* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1858 568 ProSitePatterns Pectinesterase signature 1. 274 293 IPR018040 -
Gso19g1858 568 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Gso19g1858 568 SUPERFAMILY Pectin lyase-like 245 559 IPR011050 -
Gso19g1858 568 CDD PMEI-like_3 45 202 - -
Gso19g1858 568 Pfam Plant invertase/pectin methylesterase inhibitor 44 196 IPR006501 GO:0004857
Gso19g1858 568 Pfam Pectinesterase 249 545 IPR000070 GO:0030599|GO:0042545
Gso19g1858 568 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 199 IPR006501 GO:0004857
Gso19g1858 568 Gene3D - 243 564 IPR012334 -
Gso19g1858 568 SMART PMEI_2 37 196 IPR006501 GO:0004857
Gso19g1858 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 201 IPR035513 -
Gso19g1858 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Gso19g1858 568 PANTHER PECTINESTERASE 3 564 - -
Gso19g1858 568 PANTHER PECTINESTERASE 3 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1858 Gso-Chr19 47272926 47275109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1858 1 565 Carbohydrate Esterase AT2G47030 40.698 6.67e-140 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1858 K01051 - gmx:100781507 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1858 19 47272926 47275109 Gso2g0074 2 843666 850339 PCT
Gso19g1858 19 47272926 47275109 Gso10g0079 10 886395 888653 PCT
Gso2g0073 2 836645 838987 Gso19g1858 19 47272926 47275109 PCT
Gso10g1267 10 38520507 38523576 Gso19g1858 19 47272926 47275109 PCT