Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1856 ATGAGTTGCTTCGGCTGTTGTGAGGAAGATGACTACCAGAAGACTGCTGAAAGTGGAGGACAGCATGTGGTAAAAAACTCAACAGGAAATGATGGAAACAGTCGTGCATCCGAAACTGCAAAGCAGGGGACTCAAGCTGTTAAAATTCAGCCCATTGAAGTTCCTGAATTACAAGTGGATGAACTCAAAGAAATCACCGATGGCTTTGGAGAAAGTTCTTTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGTGTTCTTAAAAGTGGGCAGGCTGCGGCAATCAAGAAATTAGATGCCAGTAAACAGCCTGATGACGAATTTTTAGCCCAGGTTTCAATGGTTTCACGGCTGAAGCATGACAATTTTGTTCAATTGCTTGGTTATTGCATTGATGGAAACTCCCGAGTTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTTCATGATATTTTACATGGCAGAAAAGGAGTTAAAGGAGCACAGCCTGGTCCTGTTCTAACATGGACTCAGAGAGTTAAAATTGCTGTAGGGGCTGCCAAAGGGCTTGAGTACCTGCATGAGAGGGCTGATCCCCACATTATCCACCGGGACATCAAGTCAAGCAATGTACTAATCTTTGATGACGATGTTGCTAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCTGACATGGCAGCACGTCTCCATTCCACCCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGCCAATTGAATGCCAAGAGTGATGTATACAGCTTTGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAGCCTGTTGATCATACACTACCACGTGGGCAGCAGAGCCTGGTTACTTGGGCTACACCAAGACTCAGTGAGGATAAAGTCAGACAGTGTGTAGATGCAAGACTAGGAGGAGAATACCCACCCAAAGCTGTTGCTAAGATGGCCGCTGTTGCTGCCCTGTGCGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTATTGAATGCAAGACATGGGCCTGCTGGTGAAACTCCAAACTAA 1086 0.4466 MSCFGCCEEDDYQKTAESGGQHVVKNSTGNDGNSRASETAKQGTQAVKIQPIEVPELQVDELKEITDGFGESSLIGEGSYGRVYYGVLKSGQAAAIKKLDASKQPDDEFLAQVSMVSRLKHDNFVQLLGYCIDGNSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLTWTQRVKIAVGAAKGLEYLHERADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVRQCVDARLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARHGPAGETPN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1856 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Gso19g1856 361 PIRSF ILK 9 353 - -
Gso19g1856 361 CDD STKc_IRAK 75 348 - -
Gso19g1856 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1856 361 Gene3D Transferase(Phosphotransferase) domain 1 144 355 - -
Gso19g1856 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Gso19g1856 361 Gene3D Phosphorylase Kinase; domain 1 29 143 - -
Gso19g1856 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Gso19g1856 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Gso19g1856 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1856 361 SUPERFAMILY Protein kinase-like (PK-like) 48 345 IPR011009 -
Gso19g1856 361 MobiDBLite consensus disorder prediction 19 45 - -
Gso19g1856 361 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Gso19g1856 361 MobiDBLite consensus disorder prediction 17 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1856 Gso-Chr19 47254576 47258258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1856 48 352 Receptor kinase-like Gene Family AT3G58690 49.355 3.05e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Gso19g1856 PK_Tyr_Ser-Thr 6.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1856 K13436 - gmx:100499642 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1856 19 47254576 47258258 Gso3g1891 3 44457180 44461026 GST
Gso19g1856 19 47254576 47258258 Gso2g0075 2 851693 855673 PCT
Gso19g1856 19 47254576 47258258 Gso10g0080 10 889933 893852 PCT
Gso2g0075 2 851693 855673 Gso19g1856 19 47254576 47258258 PCT
Gso10g0080 10 889933 893852 Gso19g1856 19 47254576 47258258 PCT