Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1853 ATGGACGACTGTTGTGCCGTTTGTGCTGAGCCTTTGGAATGGGTTGCGTACGGACCCTGCTTGCACCGGGAGGTGTGTTCCACGTGCGTCGCTCGTCTCCGTTTCATCTGCGACGATCGCCTTTGCTGCATCTGCAAGACCGAATGCAACCTTGTTTTCGCCACCAAGGCTCTAGGTGATTATACAAGGATGATCAATGATTTTTCGACCCTTCCTTCAGAGGTGAGGGAGGGCAAGGTTGGATCATATTGGTACCATGAGGATACAAATACATTTTTTGATGATATGGACCATTACAGGATGATCAAGGCTATGTGCAGACTTTCGTGCAGTGTATGTGACAAGATTGAGGATCAACCACAGGATGCTGCATCAAGGCGGCGAGCGAAGTTTAGGAATATAGGGCAGTTGAAGGGTCATTTATTCCACCGTCACAAGTTGCATATGTGCAATTTGTGTTTAGAAGGAAGGAAGGTTTTTATATGTGAGCAAAAACTATATACCAAAGCACAGTTGAATCAACACATAATCTCAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGCGGTTTCATGGGGCATCCCATGTGTGAATTCTGTAGAACCCCATTTTATGGAGACAATGAATTATACATGCATATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGGCAGTATGAGTACTATAAGAATTATGATGACCTAGAGATCCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAGGCTTGCCTTACTAAGAAGTTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAGGCATAATGCTATTGAACATGGAGGGCGGATGTCACGGTCCAAGCGTAATGCTGCTCTTCAGATACCAACTAGCTTCCGATACAGACATGGTAATGAACATGAGCAACGCCGTGGAAGAGGTCGTACGTTTCGTCGTGATACTGAAAATCAACTTTCTATGGCCATTGAAGCTAGTTTGGAAACAGCTAATGCAGAGCGAACATTTCGTGATCAATCGACATCAAGTATTGGGCAAATTGCTGTTGATGATGGGAATGATGATATTGATTCTCTCATTCAGCCATTTGAATCATTAGCTGCTGGAGGTTCTGAATCATCTGCAAGATACCTTCAAGCCTTGGGGCATAGCTCTAGAAATGGGCCTCTGGAAGATTCTTCCTTTCCACCTCTACCCATAACTTCCAGCAATGGCCAGCAAAGGTCCAAACATGAACTGGAAGGTTCATCTAGTAACACTATGGCTGCACGTCTGCGTCGGCATGGCAACAGAACTGTATCCGTTGTCAATTCTGGTAATGCTTGGCCAGCAGCAGGCCGTGGACTGGTACAAACATCAAGTAATCCTTCACAATCTAAACCGTCAACAAATAATGTTCTTGGACTGTCTCGTAACACTGGGCAGATGAAAACAGTAATTAACAGTGGACCTTCATCATCAACTTATGCAGGTTCTATTCAGGCTACACAAAGAACTACTCACGGACAATTACCTGCTGGTTCATCGAGGAACACACGCGACAATGTCAGAATTGTTCACTCTGCATCTGCTCCAAATCTCATGGAGAACAACTCTGTTGAAATTTCAATTTCTGATTTTCCTCCAGTTTCTGCTGCACAAGTGAGTAAGTTACCTGCCAGCAGCCAGTCTAAATTAAACGTGGAAAATTTTCAATCTGCTAACAAGTCTTTGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGAAAGATACAGTATATTTAAAGACATATCTGCCCAATATCGCCAAGGCACAATAGATACAGGTACATATGTGGACTATGTGCAGCAGTTTGGCTTGTCTCATCTTGTGCTTGAGTTGGCAAGACTATGCCCGGATACTCAGAAACAAAAAGAGCTTATTGAGGCTCACAACGCTAGTTTGCAAAGAGATGCTTTCCCAGAAATTAACTTAGTTCGAGGCACTGCTAGCACCCATCACAAAGACGGTAATTTAAACAAGAAAGGTAAAGGTAAGTCTGTAGATAGTAGGGGGAGTAACTCCACAGAGAAATTAGCAGATAGCTTTTTAAGCACTGTACATCAGCTACAGGCAAATTATAAATCTTCAGAAGAGAAAGTGGAGGTGCTATCAAGGGGTGATTACCGCACTGACAGGGGCAAATTAAAAATCAAGCAGCAGATTGATTCAAATCCTGGTAGTCAACCTACAATGAAGCTTGGTGGGCAGACTGAAACATCAAATGGCAGTTTATCCGATCAAAGTAAAGAGGATGGGGGTGGTGGGAACAAGCAACGCAAGAAAACTTCAAAGTTCCTGAGAGTGCGCCTTGGTGATGGTTCTGTTTCATCCCTTCTTGATCAATCAGATCCTGGAACAACAGACAGCTCAGAAGGTAACAATGATGACGTTGGAGGAGGGCCTCCTGTGCGAGGTGTTTGGCGAAAAGGGGGAGGTCATAAACTTTTTCCCTAG 2502 0.4376 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRLCCICKTECNLVFATKALGDYTRMINDFSTLPSEVREGKVGSYWYHEDTNTFFDDMDHYRMIKAMCRLSCSVCDKIEDQPQDAASRRRAKFRNIGQLKGHLFHRHKLHMCNLCLEGRKVFICEQKLYTKAQLNQHIISGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYMHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQEHFLCEDEACLTKKFVVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEHEQRRGRGRTFRRDTENQLSMAIEASLETANAERTFRDQSTSSIGQIAVDDGNDDIDSLIQPFESLAAGGSESSARYLQALGHSSRNGPLEDSSFPPLPITSSNGQQRSKHELEGSSSNTMAARLRRHGNRTVSVVNSGNAWPAAGRGLVQTSSNPSQSKPSTNNVLGLSRNTGQMKTVINSGPSSSTYAGSIQATQRTTHGQLPAGSSRNTRDNVRIVHSASAPNLMENNSVEISISDFPPVSAAQVSKLPASSQSKLNVENFQSANKSLVEKIRGALDFDEERYSIFKDISAQYRQGTIDTGTYVDYVQQFGLSHLVLELARLCPDTQKQKELIEAHNASLQRDAFPEINLVRGTASTHHKDGNLNKKGKGKSVDSRGSNSTEKLADSFLSTVHQLQANYKSSEEKVEVLSRGDYRTDRGKLKIKQQIDSNPGSQPTMKLGGQTETSNGSLSDQSKEDGGGGNKQRKKTSKFLRVRLGDGSVSSLLDQSDPGTTDSSEGNNDDVGGGPPVRGVWRKGGGHKLFP* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1853 833 MobiDBLite consensus disorder prediction 736 767 - -
Gso19g1853 833 SMART c2h2final6 252 281 IPR013087 -
Gso19g1853 833 SMART c2h2final6 108 145 IPR013087 -
Gso19g1853 833 SMART c2h2final6 221 251 IPR013087 -
Gso19g1853 833 SMART c2h2final6 197 220 IPR013087 -
Gso19g1853 833 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Gso19g1853 833 CDD RING-HC_ZNF598 5 46 IPR041888 -
Gso19g1853 833 MobiDBLite consensus disorder prediction 669 683 - -
Gso19g1853 833 MobiDBLite consensus disorder prediction 454 522 - -
Gso19g1853 833 MobiDBLite consensus disorder prediction 663 690 - -
Gso19g1853 833 PANTHER ZINC FINGER PROTEIN 598 1 831 IPR044288 GO:0061630|GO:0072344
Gso19g1853 833 MobiDBLite consensus disorder prediction 339 355 - -
Gso19g1853 833 MobiDBLite consensus disorder prediction 727 833 - -
Gso19g1853 833 MobiDBLite consensus disorder prediction 791 810 - -
Gso19g1853 833 MobiDBLite consensus disorder prediction 453 522 - -
Gso19g1853 833 MobiDBLite consensus disorder prediction 337 356 - -
Gso19g1853 833 MobiDBLite consensus disorder prediction 390 425 - -
Gso19g1853 833 PANTHER EBR1 1 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1853 Gso-Chr19 47223995 47228608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1853 1 832 C2H2 Transcription Factor Family AT3G62240 51.804 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1853 K22381 - gmx:100780426 1657.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1853 19 47223995 47228608 Gso3g1889 3 44442197 44446639 GST