Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1843 ATGGATGTTAATAAGGTGAAGAAAGCACGGTCCATAGTGCTGGATTGTGAAGAAGAAATCAGAAAAGGTCCATGGAGCGTTGAAGAGGACACCATTCTCCAAAATCACGTCGCCACCCACGGCGACGGTCGCTGGAATTCCCTCGCACGCTCTGCAGGCCTGAAAAGATCGGGGAAAAGTTGCAGGTTAAGATGGCTAAACTACTTGCGTCCCGATGTTCGTCGCGGAAATATAACACTCCAAGAACAGATAACTATTCTGGAGCTCCACTCTCGCTGGGGCAATAGGTGGTCGAAAATTGCTCGGCATCTTCCGGGTAGAACAGACAACGAAATAAAGAATTATTGGAGGACCCGAGTGATTAAGCAAGCAAGGAATCTCAATTGTGACGTGGACAGTAAACAGTTCCAAGATGCTTTGCGTTGCGTGTGGATGCCCCGTTTGATAGAGCGGATTCAGCCACCATTACCAATACCATCGGAATTAACTCACGGCCCGGCCCATATTGCCACCTCGCAACTTGGCCCAAACCCAACCGCTCAGGCCCAACATGAGTTTCATGGTTCCTTGGAGTTAAACGCTCCTTTAGATTCTGAACATCATGTTTGGGGTGCATGCCACTGTTTCAATGGGAATAGCACGTTACCTTTAGGTGGTGGGGACTTGATGGAAAGTTTGTGGGATGATTTGGAAATTAAACACAATTTCCTTGCGTGA 717 0.4798 MDVNKVKKARSIVLDCEEEIRKGPWSVEEDTILQNHVATHGDGRWNSLARSAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILELHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVIKQARNLNCDVDSKQFQDALRCVWMPRLIERIQPPLPIPSELTHGPAHIATSQLGPNPTAQAQHEFHGSLELNAPLDSEHHVWGACHCFNGNSTLPLGGGDLMESLWDDLEIKHNFLA* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1843 238 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Gso19g1843 238 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Gso19g1843 238 CDD SANT 24 69 IPR001005 -
Gso19g1843 238 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Gso19g1843 238 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 6 160 - -
Gso19g1843 238 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Gso19g1843 238 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Gso19g1843 238 SMART sant 74 122 IPR001005 -
Gso19g1843 238 SMART sant 21 71 IPR001005 -
Gso19g1843 238 Gene3D - 22 74 - -
Gso19g1843 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Gso19g1843 238 Gene3D - 79 120 - -
Gso19g1843 238 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 6 160 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso19g1843 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Gso19g1843 238 CDD SANT 79 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1843 Gso-Chr19 47134634 47136375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1843 19 164 MYB Transcription Factor Family AT1G48000 70.548 9.58e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g1843 Myb_DNA-binding 4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1843 K09422 - gmx:100777760 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1843 19 47134634 47136375 Gso3g1879 3 44345928 44347285 GST
Gso19g1843 19 47134634 47136375 Gso10g0093 10 988167 989355 PCT
Gso10g0093 10 988167 989355 Gso19g1843 19 47134634 47136375 PCT