Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1842 ATGGAGAGGAGTTTATCAGGAAGTAGTGAAGAGGAGATGTCAATAACGAAAGGTCCATGGACAGAGGAAGAGGATTCTGTTCTCTTCAATTACATCACTGTCCATGGGGAAGGTCACTGGAACTCTGTCGCTCGCTACACAGGTCTAAAACGAACAGGCAAAAGCTGCAGATTAAGATGGTTAAACTACTTGCGTCCAAATGTTCGACGTGGGAACATAACCCTCGAAGAACAGCTCTTGATTCTTGACCTCCATTCCCGTTGGGGCAACAGGTGGTCGAAAATAGCTGAACATTTACCAGGAAGAACAGACAACGAGATAAAGAACTATTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTAAAGTGTGAGGTGAACAGCAAGCAATTCAGGGACACGTTGCGTTTTGTGTGGATGCCACGTATGTTAGAGCGGATCCAAGCTCAGGCCTCATCATCATCATCATCATCATCAGGCCAAGCCCACCAAACCACGTTAATCTCCAACGCTCAAGCACACAGTGACCCTTGCGGAGTCATGACGACCAACCCAAGTTTGTTGTCGGAGGTGTCATCATCAGCCCTTGATGCCCACGCGCCTTCTCTCTATGACTCTAGTGCGTCTTACAATCTAATGGGTGGTGGTAGTTCCTCATCGTATAGTGCAGAATATTGCTACTACTCGGACATAGCAGGAAATGGTTTTGGTGGTTCGGACTTGTGGACGGATGAAAATATTTGCTTTCTGCAACAGCTGCTCGCTGATCATGACTTGTCGTGA 783 0.4713 MERSLSGSSEEEMSITKGPWTEEEDSVLFNYITVHGEGHWNSVARYTGLKRTGKSCRLRWLNYLRPNVRRGNITLEEQLLILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCEVNSKQFRDTLRFVWMPRMLERIQAQASSSSSSSSGQAHQTTLISNAQAHSDPCGVMTTNPSLLSEVSSSALDAHAPSLYDSSASYNLMGGGSSSSYSAEYCYYSDIAGNGFGGSDLWTDENICFLQQLLADHDLS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1842 260 Gene3D - 74 115 - -
Gso19g1842 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 7 199 - -
Gso19g1842 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Gso19g1842 260 CDD SANT 74 113 IPR001005 -
Gso19g1842 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Gso19g1842 260 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Gso19g1842 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 199 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso19g1842 260 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Gso19g1842 260 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Gso19g1842 260 CDD SANT 19 64 IPR001005 -
Gso19g1842 260 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Gso19g1842 260 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Gso19g1842 260 Gene3D - 16 69 - -
Gso19g1842 260 SMART sant 16 66 IPR001005 -
Gso19g1842 260 SMART sant 69 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1842 Gso-Chr19 47125827 47127748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1842 4 256 MYB Transcription Factor Family AT2G47190 47.761 3.06e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g1842 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1842 K09422 - gmx:100819467 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1842 19 47125827 47127748 Gso3g1878 3 44338241 44339634 GST
Gso19g1842 19 47125827 47127748 Gso2g0087 2 948047 949578 PCT
Gso19g1842 19 47125827 47127748 Gso10g0094 10 996067 997725 PCT
Gso2g0087 2 948047 949578 Gso19g1842 19 47125827 47127748 PCT
Gso10g0094 10 996067 997725 Gso19g1842 19 47125827 47127748 PCT