Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1840 ATGGACGCGAAGGATATCCTGGGATTGCCCAAAAACTCATTCCCAACTCTCGAGAAGAAGTCTCGTCCTCCCAAAGAGTCTCAAAGAAAACCAGATGGCATTTCACGCGAGGTGTATGCGCTTACGGGTGGATTGGCCCCTCTCATGCCTGCAACTGAAGCCTCTCAGTTGAAGAAAAAGCCTCCTCCTCTGGAAAAGATCACTTGGCAGTGGCTTCCTTTCACCAGTTCTGCTCGTAAAGATAATCTTCATCTTTACCATTGGGTACGAGTCGTTAATGGTGTTCCTCCCACAGGGGACTATTCTTTTGCCAAGTATAACAAGTCCGTTGATGTTATCAAATACACAGATGAGGAGTATGACAAGTATTTGACAGATCCTATGTGGACCAAAGAGGAGACGGATCAACTATTTGACTTATGTGAGAGATTTGATCTCCGATTTATTGTAATAGCTGATAGGTTTCCATCCTCTCGGACTGTAGAGGAATTAAAGGATAGATATTATAGTGTTTCCCGGGCTATATTGATTGCTAGGGCTCCATCTTCTGGGGATGTCGCAGCACATCCTATTGTTAAGGAAACATATAATTTTGCACAAGAAATGGAACGAAAACGAGCACTGTCCATGGTCCTCTCTCAAACAAGGCAACAAGAACGAAGAGATGAAGAGGTTCTTGTTGAAGCAAAAAAAATAGCGGAAAAACGCCTACCTCCCAAGGTTGCTGAACAGTCTCAGTTGGTTGCTTCTAATGCTGGTGCAGAAGCTACAGAGAGGGCTGTCCCTGGTGAAACCATATCTCCATCAAATGTGCAAATTCCAATGGCTGTTCCAGATAATGCATCTACTCTAGCTTCTCTTCGTATGCTTCGTGTATATTTGAGAACATATGCACTTGAGCAAATGGTGCAAGCTGCGAACGCATCTGCTGGACTTCGGACTATCAAACGGGTTGAACAAACTTTGCAAGATCTTGGGGTCAATTTGAAGCCAAGGGTTCCAACGAAAGCTGTTTGTGCAGAGCATCTTGAATTAAGAAAAGAAATACTAACTTGGCTTAATCTCCAGAAGCAGGTGCAATATAAAGAGGCTGAAGGTTCCTCTTTTCGTGATGGGTCATATGGTGAAACACCTGGAACACCAAAGGACCGAACATTTGTTCCAGATTCAACGAATTTCGGAGTGGAAAGGGTTGGCAAAAAGGACCAAAAGCGCAAGGCACCTGGAGCTCCATCAGCTCATAAAAGACCTAGAAAACTAAAGGCCTCAGATCTTTAG 1278 0.4405 MDAKDILGLPKNSFPTLEKKSRPPKESQRKPDGISREVYALTGGLAPLMPATEASQLKKKPPPLEKITWQWLPFTSSARKDNLHLYHWVRVVNGVPPTGDYSFAKYNKSVDVIKYTDEEYDKYLTDPMWTKEETDQLFDLCERFDLRFIVIADRFPSSRTVEELKDRYYSVSRAILIARAPSSGDVAAHPIVKETYNFAQEMERKRALSMVLSQTRQQERRDEEVLVEAKKIAEKRLPPKVAEQSQLVASNAGAEATERAVPGETISPSNVQIPMAVPDNASTLASLRMLRVYLRTYALEQMVQAANASAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRKEILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKDRTFVPDSTNFGVERVGKKDQKRKAPGAPSAHKRPRKLKASDL* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1840 425 MobiDBLite consensus disorder prediction 18 33 - -
Gso19g1840 425 Gene3D - 98 184 - -
Gso19g1840 425 MobiDBLite consensus disorder prediction 366 425 - -
Gso19g1840 425 MobiDBLite consensus disorder prediction 395 409 - -
Gso19g1840 425 SUPERFAMILY Homeodomain-like 125 174 IPR009057 -
Gso19g1840 425 CDD SANT_DMAP1_like 129 171 - -
Gso19g1840 425 PANTHER BNAA04G26950D PROTEIN 2 425 - -
Gso19g1840 425 SMART sant 125 174 IPR001005 -
Gso19g1840 425 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
Gso19g1840 425 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 425 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Gso19g1840 425 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1840 Gso-Chr19 47108667 47116037 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso19g1840 SANT_DAMP1_like 6.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1840 K11324 - gmx:100818926 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1840 19 47108667 47116037 Gso3g1876 3 44318843 44325499 GST