Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso19g1834 | ATGGAGAATAACCCGAAGGAGCAAGCGGAGCAGCAAAGGGTCAATTTCAACGGAGACCCTCACATTCACGACAATGGCAACGTATTCCACCACTTCCAACCCACACCCGCCGTCGATTCTGGTTACGCTCTTAACCATTCCATGGCTCGCCCTCTCCGCAAACGCCCCTGGCATCACTCCAACAACGGAACTTCTCCAGATCAAGTGGACGTTTCGTGTAAAGTTTATGTTGCACCTGTTCCAAGAACGGCCACGGAGGATGAGATTTGCACTGTATTCGAAGAACATGGAACTATTGTTGAGATTGTTCTTTTAAAACATAAGAAAACTGGTACACGGCAAGGAAGTTGTTTTGTAAAATATGCAACATTTGATGAAGCTGACAGGGCTATTAAGGCTTTAAACAATAAATATACATTTGCTGGGGAATCATATCCTGTTGTTGTCAAATTTGCTGACCGAGAACTTGAACGCCTTGGGGTTCGAGGGTTCTGCCGTAACATGGAAAAGAAAGATCCCTTAGAAGAGGTGGCAGATAAAGTTTTTGTTAGTTCCATCAATAAAGAAGCTACAAACAAGGAAATTGAAGATATATTTTCCCCTTATGGGCATGTTGAAGATATCTTCTTTAAAAGCACTCATGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTGGCTGCAATCAAAGGGCTGAATAAAACCTTCACGATGAGAGGTTGTGATCATCCTTTAATTGTTCGTTTTGCGGATCCTAAGAAGCCTAAGACTGGAGAATCAAGGGGCAACTTTTTATCTGTGAATGCAAATTTCGGTCCTTGTTCCCAAGAACCAGCAGTATGGCCACTGCCAAATTTTGGTGATTCTAATAATGGAGGAATTATTCTGCCTCATGCCCCATATCATTCCTCAATTGCACACCCACAAGTTACTTCTCATATGCAAAACTGGGAACCTGGTGCTACTGTCTTACAACATCCATTTCCTCCTCAACAAGTGCATCCACATGTGGCTTCAATGCCTTTGGGGTCAATTCAAGCTCCCAAATTGTCTTCTCAGCCATTTATTACTGAGGTTCCAAGACAATCACATCCAGCAGATTCATCAGTTCAAAATATAGAGCAGCAGCTTAGTTCACAGCTGCCTTCTCAGACCGAAAGCAACCCTAGTACAGTTACTGGCATTACCCTGCCGGATATGCCTACAAGTCCCCAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGCGATAAGTACTACTACAACTGTATAACTTGTGAAAGCAGATGGGATAAGCCTGAGGAGTATGCCTTGTACGAGAAAGAATCTCAGAAGCAGCAGGAGCGGGAGGATAATTGCTGTAGTCTCTCACAATTGTCGTTATCTTCCTCTCAACTAGTTGGTCAAAAACAACAGGAGACAGATCATGACCACAAGCAATCAGAAACAATTCCTGTTGTTGGATAG | 1491 | 0.4313 | MENNPKEQAEQQRVNFNGDPHIHDNGNVFHHFQPTPAVDSGYALNHSMARPLRKRPWHHSNNGTSPDQVDVSCKVYVAPVPRTATEDEICTVFEEHGTIVEIVLLKHKKTGTRQGSCFVKYATFDEADRAIKALNNKYTFAGESYPVVVKFADRELERLGVRGFCRNMEKKDPLEEVADKVFVSSINKEATNKEIEDIFSPYGHVEDIFFKSTHGYAFVKFSNREMALAAIKGLNKTFTMRGCDHPLIVRFADPKKPKTGESRGNFLSVNANFGPCSQEPAVWPLPNFGDSNNGGIILPHAPYHSSIAHPQVTSHMQNWEPGATVLQHPFPPQQVHPHVASMPLGSIQAPKLSSQPFITEVPRQSHPADSSVQNIEQQLSSQLPSQTESNPSTVTGITLPDMPTSPQDEDFPECDWSEHYCPDGDKYYYNCITCESRWDKPEEYALYEKESQKQQEREDNCCSLSQLSLSSSQLVGQKQQETDHDHKQSETIPVVG* | 497 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso19g1834 | 496 | ProSitePatterns | WW/rsp5/WWP domain signature. | 416 | 441 | IPR001202 | GO:0005515 | |
Gso19g1834 | 496 | SUPERFAMILY | RNA-binding domain, RBD | 175 | 263 | IPR035979 | GO:0003676 | |
Gso19g1834 | 496 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 416 | 443 | IPR001202 | GO:0005515 | |
Gso19g1834 | 496 | SUPERFAMILY | RNA-binding domain, RBD | 53 | 161 | IPR035979 | GO:0003676 | |
Gso19g1834 | 496 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 179 | 254 | IPR000504 | GO:0003723 | |
Gso19g1834 | 496 | SMART | ww_5 | 411 | 443 | IPR001202 | GO:0005515 | |
Gso19g1834 | 496 | Pfam | WW domain | 414 | 441 | IPR001202 | GO:0005515 | |
Gso19g1834 | 496 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 75 | 138 | IPR000504 | GO:0003723 | |
Gso19g1834 | 496 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 181 | 239 | IPR000504 | GO:0003723 | |
Gso19g1834 | 496 | Gene3D | - | 60 | 158 | IPR012677 | - | |
Gso19g1834 | 496 | PANTHER | RNA BINDING PROTEIN | 52 | 485 | - | - | |
Gso19g1834 | 496 | MobiDBLite | consensus disorder prediction | 361 | 411 | - | - | |
Gso19g1834 | 496 | PANTHER | FLOWERING TIME CONTROL FCA-LIKE PROTEIN | 52 | 485 | - | - | |
Gso19g1834 | 496 | SUPERFAMILY | WW domain | 415 | 447 | IPR036020 | GO:0005515 | |
Gso19g1834 | 496 | CDD | WW | 414 | 443 | IPR001202 | GO:0005515 | |
Gso19g1834 | 496 | Gene3D | - | 167 | 262 | IPR012677 | - | |
Gso19g1834 | 496 | Gene3D | - | 402 | 462 | - | - | |
Gso19g1834 | 496 | MobiDBLite | consensus disorder prediction | 361 | 402 | - | - | |
Gso19g1834 | 496 | SMART | rrm1_1 | 180 | 250 | IPR000504 | GO:0003723 | |
Gso19g1834 | 496 | SMART | rrm1_1 | 74 | 150 | IPR000504 | GO:0003723 | |
Gso19g1834 | 496 | MobiDBLite | consensus disorder prediction | 472 | 496 | - | - | |
Gso19g1834 | 496 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 73 | 154 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso19g1834 | Gso-Chr19 | 47062490 | 47071171 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso19g1834 | 75 | 284 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 27.027 | 1.15e-11 | 65.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso19g1834 | K13207 | - | gmx:100776162 | 1015.37 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso19g1834 | 19 | 47062490 | 47071171 | Gso3g1871 | 3 | 44274971 | 44281722 | GST |