Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1834 ATGGAGAATAACCCGAAGGAGCAAGCGGAGCAGCAAAGGGTCAATTTCAACGGAGACCCTCACATTCACGACAATGGCAACGTATTCCACCACTTCCAACCCACACCCGCCGTCGATTCTGGTTACGCTCTTAACCATTCCATGGCTCGCCCTCTCCGCAAACGCCCCTGGCATCACTCCAACAACGGAACTTCTCCAGATCAAGTGGACGTTTCGTGTAAAGTTTATGTTGCACCTGTTCCAAGAACGGCCACGGAGGATGAGATTTGCACTGTATTCGAAGAACATGGAACTATTGTTGAGATTGTTCTTTTAAAACATAAGAAAACTGGTACACGGCAAGGAAGTTGTTTTGTAAAATATGCAACATTTGATGAAGCTGACAGGGCTATTAAGGCTTTAAACAATAAATATACATTTGCTGGGGAATCATATCCTGTTGTTGTCAAATTTGCTGACCGAGAACTTGAACGCCTTGGGGTTCGAGGGTTCTGCCGTAACATGGAAAAGAAAGATCCCTTAGAAGAGGTGGCAGATAAAGTTTTTGTTAGTTCCATCAATAAAGAAGCTACAAACAAGGAAATTGAAGATATATTTTCCCCTTATGGGCATGTTGAAGATATCTTCTTTAAAAGCACTCATGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTGGCTGCAATCAAAGGGCTGAATAAAACCTTCACGATGAGAGGTTGTGATCATCCTTTAATTGTTCGTTTTGCGGATCCTAAGAAGCCTAAGACTGGAGAATCAAGGGGCAACTTTTTATCTGTGAATGCAAATTTCGGTCCTTGTTCCCAAGAACCAGCAGTATGGCCACTGCCAAATTTTGGTGATTCTAATAATGGAGGAATTATTCTGCCTCATGCCCCATATCATTCCTCAATTGCACACCCACAAGTTACTTCTCATATGCAAAACTGGGAACCTGGTGCTACTGTCTTACAACATCCATTTCCTCCTCAACAAGTGCATCCACATGTGGCTTCAATGCCTTTGGGGTCAATTCAAGCTCCCAAATTGTCTTCTCAGCCATTTATTACTGAGGTTCCAAGACAATCACATCCAGCAGATTCATCAGTTCAAAATATAGAGCAGCAGCTTAGTTCACAGCTGCCTTCTCAGACCGAAAGCAACCCTAGTACAGTTACTGGCATTACCCTGCCGGATATGCCTACAAGTCCCCAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGCGATAAGTACTACTACAACTGTATAACTTGTGAAAGCAGATGGGATAAGCCTGAGGAGTATGCCTTGTACGAGAAAGAATCTCAGAAGCAGCAGGAGCGGGAGGATAATTGCTGTAGTCTCTCACAATTGTCGTTATCTTCCTCTCAACTAGTTGGTCAAAAACAACAGGAGACAGATCATGACCACAAGCAATCAGAAACAATTCCTGTTGTTGGATAG 1491 0.4313 MENNPKEQAEQQRVNFNGDPHIHDNGNVFHHFQPTPAVDSGYALNHSMARPLRKRPWHHSNNGTSPDQVDVSCKVYVAPVPRTATEDEICTVFEEHGTIVEIVLLKHKKTGTRQGSCFVKYATFDEADRAIKALNNKYTFAGESYPVVVKFADRELERLGVRGFCRNMEKKDPLEEVADKVFVSSINKEATNKEIEDIFSPYGHVEDIFFKSTHGYAFVKFSNREMALAAIKGLNKTFTMRGCDHPLIVRFADPKKPKTGESRGNFLSVNANFGPCSQEPAVWPLPNFGDSNNGGIILPHAPYHSSIAHPQVTSHMQNWEPGATVLQHPFPPQQVHPHVASMPLGSIQAPKLSSQPFITEVPRQSHPADSSVQNIEQQLSSQLPSQTESNPSTVTGITLPDMPTSPQDEDFPECDWSEHYCPDGDKYYYNCITCESRWDKPEEYALYEKESQKQQEREDNCCSLSQLSLSSSQLVGQKQQETDHDHKQSETIPVVG* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1834 496 ProSitePatterns WW/rsp5/WWP domain signature. 416 441 IPR001202 GO:0005515
Gso19g1834 496 SUPERFAMILY RNA-binding domain, RBD 175 263 IPR035979 GO:0003676
Gso19g1834 496 ProSiteProfiles WW/rsp5/WWP domain profile. 416 443 IPR001202 GO:0005515
Gso19g1834 496 SUPERFAMILY RNA-binding domain, RBD 53 161 IPR035979 GO:0003676
Gso19g1834 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 254 IPR000504 GO:0003723
Gso19g1834 496 SMART ww_5 411 443 IPR001202 GO:0005515
Gso19g1834 496 Pfam WW domain 414 441 IPR001202 GO:0005515
Gso19g1834 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 138 IPR000504 GO:0003723
Gso19g1834 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 239 IPR000504 GO:0003723
Gso19g1834 496 Gene3D - 60 158 IPR012677 -
Gso19g1834 496 PANTHER RNA BINDING PROTEIN 52 485 - -
Gso19g1834 496 MobiDBLite consensus disorder prediction 361 411 - -
Gso19g1834 496 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 52 485 - -
Gso19g1834 496 SUPERFAMILY WW domain 415 447 IPR036020 GO:0005515
Gso19g1834 496 CDD WW 414 443 IPR001202 GO:0005515
Gso19g1834 496 Gene3D - 167 262 IPR012677 -
Gso19g1834 496 Gene3D - 402 462 - -
Gso19g1834 496 MobiDBLite consensus disorder prediction 361 402 - -
Gso19g1834 496 SMART rrm1_1 180 250 IPR000504 GO:0003723
Gso19g1834 496 SMART rrm1_1 74 150 IPR000504 GO:0003723
Gso19g1834 496 MobiDBLite consensus disorder prediction 472 496 - -
Gso19g1834 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 154 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1834 Gso-Chr19 47062490 47071171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1834 75 284 Eukaryotic Initiation Factors Gene Family AT1G49760 27.027 1.15e-11 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1834 19 47062490 47071171 Gso3g1871 3 44274971 44281722 GST