Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1833 ATGGAGAATAATAAGATGATGGGTGTGAAGAAAGAGGACTATGCTGCCAATATAGGATCTTCATCCCTCCCTTCTTGTAATAATTATCCATTCTTTGATTTCTCTGAAGATAAGGGCTCTTTAGGGTTTATGGAGCTATTGGGTGTGCAAGACTACAATCATCTCCTTGATTTCCCTCTATCGTCACACGTGTCAGTGCCTCAAACCTCTGCGGTTAAGGAACCACCTGAGACTAAGAAAGAGTGTTCCGAGGTAACCAACAACCAGCAACCGACGACTCCGAACTCTTCATCCATTTCCTCCGCGTCCAGTGAGGTTCTCTATGATGAACAGAATAAAACTGTAGACCTAGCACCTGAACACCAAAAGACAAAGGAACAGTTGAAGGCAAAGAAGACAAATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGCGTGGAGCGATCTTTCAGCGACCCAAGCATTGTGGTGACAACCTACGAAGGCCAACACACGCATCCAAGCCCAGTTATGGGTCGCTCCAACAACTTTGGTACGGTAATGTCTGGATCTGCTGGAAACTACATGTCCCAATATTATCATCAGCAACAAGTCCACGTCAATGCATTGTCTTCTTTGGGTTTCCTCTCTTCTTCTTCGTCTTCAAGGAATGCCACTTTTTCTCAAGAGACTGCCTTGTTAAGTGACTATGGGCTTCTTCAAGATGTTGTTCCTTCACATATGTTGAAAGAAGACTAG 873 0.4467 MENNKMMGVKKEDYAANIGSSSLPSCNNYPFFDFSEDKGSLGFMELLGVQDYNHLLDFPLSSHVSVPQTSAVKEPPETKKECSEVTNNQQPTTPNSSSISSASSEVLYDEQNKTVDLAPEHQKTKEQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFSDPSIVVTTYEGQHTHPSPVMGRSNNFGTVMSGSAGNYMSQYYHQQQVHVNALSSLGFLSSSSSSRNATFSQETALLSDYGLLQDVVPSHMLKED* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1833 290 MobiDBLite consensus disorder prediction 66 140 - -
Gso19g1833 290 PANTHER WRKY TRANSCRIPTION FACTOR 27 273 - -
Gso19g1833 290 MobiDBLite consensus disorder prediction 114 140 - -
Gso19g1833 290 MobiDBLite consensus disorder prediction 82 110 - -
Gso19g1833 290 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 27 273 IPR044810 GO:0003700
Gso19g1833 290 SMART WRKY_cls 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g1833 290 Coils Coil 118 138 - -
Gso19g1833 290 SUPERFAMILY WRKY DNA-binding domain 146 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso19g1833 290 Gene3D WRKY domain 139 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso19g1833 290 Pfam WRKY DNA -binding domain 155 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g1833 290 PIRSF WRKY_txn_fact_IIc 1 290 IPR017396 GO:0003700
Gso19g1833 290 ProSiteProfiles WRKY domain profile. 149 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1833 Gso-Chr19 47059017 47060822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1833 32 290 WRKY Transcription Factor Family AT2G47260 46.417 1.13e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso19g1833 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1833 - - gmx:100816452 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1833 19 47059017 47060822 Gso3g1870 3 44271426 44273346 GST
Gso19g1833 19 47059017 47060822 Gso2g0096 2 1022578 1024754 PCT
Gso19g1833 19 47059017 47060822 Gso10g0100 10 1078969 1081104 PCT
Gso2g0096 2 1022578 1024754 Gso19g1833 19 47059017 47060822 PCT
Gso10g0100 10 1078969 1081104 Gso19g1833 19 47059017 47060822 PCT