Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1829 ATGTCGAAGAGGAAGTTCGGATTCGAAGGGTTCGGCATAAACCGCCAATCCACCTACAGCTTCGAGCGATCCCAGCCCCCTCAGCGACTCTACGTCCCTCCCTCCGCGCGCCACGGCCACGACCACTACGAAGACACCGACATCGACAACATCGACTTCGACGACAACAACAACGACGACGGGAGCAAGAATAACAACGGTGGCGGCAACGACGACGACGACGAAATCGACCCCTTGGATGCCTTCATGGAGGGGATTCACGAGGAGATGCGGGCTGCCCCGCCGCCGAAGGAGAAGGCGGAGGACCGGTACCGCGACGACGAGGACGACGATCCCCTGGAGAGCTTTCTGAAGGCGAAGAAGGATTTAGGGTTGACTCTCGCGTCCGACGCGCTGCACGCTGGGTATGATTCCGACGAGGAGGTTTATGCTGCTGCCAAAGCTGTGGATGCTGGTATGATTGAGTATGATTCTGATGATAACCCTATTGTTATTGACAAGAAGAAAATTGAACCCATTCCTGCTCTCGATCACTCTTCCATTGATTACGAGCCTTTCAATAAGGATTTTTATGAGGAGACACCTTCAATATCAGGTATGAGTGAGCAGGATGTAAGTGAATACAGAAAGAGTTTGGCTATTCGTGTATCGGGTTTTGATGTTCCCAAGCCAATAAAGACATTTGAGGACTGTGGGTTTCCTTCGCAGATTATGAATGCTATTAAAAAACAAGGATATGAGAAGCCAACATCTATACAATGTCAGGCTTTGCCAGTTGTGCTTTCGGGCAGGGATATCATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAGCTTCAGAAGGAGGAGGGGCCTATAGGGGTCATATGTGCACCTACCAGAGAATTGGCGCATCAAATATATCTGGAGGCCAAGAAATTTGCAAAAGCATATGGGGTGCGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTGAAGGCGGGATGTGAGATAGTTGTTGCTACACCAGGAAGATTAATAGACATGCTGAAAATGAAGGCATTGACGATGATGAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGGATGTTTGATCTTGGGTTTGAGCCGCAAGTAAGGTCAATTGTTGGGCAGATTAGGCCGGACCGCCAAACTTTACTCTTTTCTGCAACTATGCCTCGAAAAGTTGAAAAGTTGGCCAGGGAAATCCTTTCTGATCCTATTAGAGTAACTGTTGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCATGTAATTCCTTCCGATTCTGAGAAATTGCCCTGGCTTCTGGAAAAGCTGCCTGAAATGATTGATCAAGGTGATACCCTAGTTTTTGCTTCAAAAAAGGCTACTGTGGATGAAATTGAATCACAATTGGCTCAAAGAGGCTTTAAAGTTGCTGCCTTGCATGGTGATAAAGATCAAGCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCCTCTACCATGTGCTAATTGCAACTGATGTTGCTGCCCGTGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGCCGTGCTGGTGACAAGGATGGGGTTGCATACACTCTTATAACTCTGAAAGAAGCACGGTTTGCTGGTGAATTGGTCAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCTGTGGAGTTGATGGATCTTGCTATGAAGGACGGGAGATTCAGGTCAAAACGTGATGCAAGAAAAGGAGGTGGAAAAAAAGGCAAAGGTAGAGGTGGGGGTGGCAGAGGCGTGCGAGGAGTGGATTTTGGCTTGGGTATTGGATATAATTCTGAGTCAAATAACGCACCATCTACCACAGCTCCCAGTCGATCTGCTGCCGTAAATTCTCTGAGAACAGGAATGATGTCACAATTTAAGAGTAACTTTGTTGCTGCTTCATCAAACTCTCAGAATCAAGGATTCGGTAGCAATACAAGCATGGCTGCTAATAAGAGACCAGCACTCCCTGGTTTTGTATCCGGTGGATCAATTGGCGGTGACATAAATACTTATCAGAATACTGCTTCACCCAATCCTGCTACATCAGCGGTAAATTCCACCAGTCAAGTTTCTGGAGTAAATCCTGGTCAGAAGAACACGAACAGTTCTAAACCTAAAGAAAGGCGGAGGCCATCAGGTTGGGATAGATAG 2307 0.4625 MSKRKFGFEGFGINRQSTYSFERSQPPQRLYVPPSARHGHDHYEDTDIDNIDFDDNNNDDGSKNNNGGGNDDDDEIDPLDAFMEGIHEEMRAAPPPKEKAEDRYRDDEDDDPLESFLKAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPIKTFEDCGFPSQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVHVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITLKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGRGVRGVDFGLGIGYNSESNNAPSTTAPSRSAAVNSLRTGMMSQFKSNFVAASSNSQNQGFGSNTSMAANKRPALPGFVSGGSIGGDINTYQNTASPNPATSAVNSTSQVSGVNPGQKNTNSSKPKERRRPSGWDR* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1829 768 Pfam DEAD/DEAH box helicase 250 421 IPR011545 GO:0003676|GO:0005524
Gso19g1829 768 MobiDBLite consensus disorder prediction 712 768 - -
Gso19g1829 768 CDD SF2_C_DEAD 444 576 - -
Gso19g1829 768 Gene3D - 434 610 IPR027417 -
Gso19g1829 768 Pfam Helicase conserved C-terminal domain 461 566 IPR001650 -
Gso19g1829 768 MobiDBLite consensus disorder prediction 717 753 - -
Gso19g1829 768 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 654 - -
Gso19g1829 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 435 IPR027417 -
Gso19g1829 768 Gene3D - 189 433 IPR027417 -
Gso19g1829 768 MobiDBLite consensus disorder prediction 617 631 - -
Gso19g1829 768 SMART helicmild6 485 566 IPR001650 -
Gso19g1829 768 MobiDBLite consensus disorder prediction 1 110 - -
Gso19g1829 768 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 378 386 IPR000629 -
Gso19g1829 768 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 457 606 IPR001650 -
Gso19g1829 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 600 IPR027417 -
Gso19g1829 768 CDD DEADc_DDX42 237 433 - -
Gso19g1829 768 SMART ultradead3 245 447 IPR014001 -
Gso19g1829 768 MobiDBLite consensus disorder prediction 613 636 - -
Gso19g1829 768 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 257 432 IPR014001 -
Gso19g1829 768 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 654 - -
Gso19g1829 768 MobiDBLite consensus disorder prediction 754 768 - -
Gso19g1829 768 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 226 254 IPR014014 GO:0003724
Gso19g1829 768 MobiDBLite consensus disorder prediction 80 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1829 Gso-Chr19 47009884 47014170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1829 226 582 Eukaryotic Initiation Factors Gene Family AT3G13920 35.556 2.94e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1829 K12835 - gmx:100814854 1383.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1829 19 47009884 47014170 Gso3g1867 3 44226595 44231461 GST