Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1828 ATGTCAATTGGTATATTGAAAAAGGTTCAAGGCTTGGTGCAGAAATGGATGCTTATATTATCTTGCTTGGTATTTGTGATTGAGGCTGGTGAAAATGATAAAACAATGGAGCCCCCTTCTTTATATGATTCTGGATCACCTTTGCCCTTTGTTGTTGTTCATGATCTACCTCTACCAGCAAATCTCCATGTGTCGAAGCATGTGCTTTCTCATGGTGCACCAATTGCTGCACTGTCACCAGTCAAGCCTCCTTCATATGGTCCTTTCACAACTGCAGGCCCTTCCGCTTTGGCCCAGCCACCATTGTCTCCTTATGCTTCTAATTGTTGTAAACAAGACATGGTGCTGAAAAGGGGCAGTAAGGATTGCCAATGTGCATATCCCATAAAGCTAGACCTTTTTCTTTCAAATGTCTCTCAAAATCCTAATTGGAATGATTTTCTTGATGAATTAGCTACCCAGCTTGGGTTGCGAAATACCCAGATTGAGCTGATAAACTTTTATGTACTCAGCTTATCAACATTAAATATATCGATGAATATTACTCCACATAAAGGCATCAGTTTCTCTGCCAATGAAGTTTCTAAAATAAACTCTTCGCTTTCAATGCATAAGGTTCAACTAAACCCTGGATTAGTGGGTGGATACAAACTTCTCAATTTAACGTGGTTTGAACCACCTCCTCCTTCTCAAGCTCCTACTTTAGCTGCATCACCTGTGAATACACCTTTGCATCATTCACCTACTGCTACATCATCATCGAGTTCTCCGAAAAGAGGAAGGCATTCAAATTTGTTTCTTATTCTTGGAATTGCTATTGGCATAATCTTCATTGCTATCATATCTGTACTTATATTCTGTTTATGTACGTTCCTGCCAAAAGCAAACACACCTCCTATAGACACTGAAAAGCCAAGGACAGAGAGTGCAATTTCAACTGTGGGTTCTCTTCCCCACCCAACTAGTACACGTTTTATTGCTTATGAAGAGCTTAAAGAAGCAACAAACAATTTTGAAGCAGCGAGCATACTTGGAGAAGGAGGGTTTGGTAGAGTTTTTAAAGGTGTCTTAAATGACGGTACTCCTGTAGCAATTAAGAGGCTTACCAGTGGAGGGCAACAGGGTGACAAAGAGTTTTTGGTTGAGGTTGAGATGCTTAGCCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTTCATTAATCGTGACTCATCACAAAATTTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTTCATGGTCCCTTGGGAATCAACTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCGCTGGATGCTGCGAGGGGACTTTCATACCTGCATGAAGACTCACAGCCCTGTGTAATACACAGAGACTTCAAGGCATCCAACATACTGCTTGAGAACAACTTTCAAGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGAAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGGTACGTAGCTCCTGAATATGCCATGACTGGGCACCTACTTGTTAAAAGTGATGTTTATAGCTATGGTGTTGTCTTGCTGGAACTGCTTACTGGTAGGAAGCCTGTGGATATGTCACAGCCAACTGGACAAGAGAACCTTGTTACTTGGGCTAGGCCAATCCTTAGAGATAAGGAGCGGTTGGAAGAGATTGCTGATCCAAGACTTGGGGGAGAGTATCCAAAGGAAGATTTTGTACGTGTTTGCACTATTGCTGCGGCCTGTGTTGCTCCGGAAGCAAACCAACGACCTACAATGGGTGAAGTGGTACAATCACTTAAAATGGTGCAGCGCGTCACAGAATACCATGATTCTGTGTTAGCCTCATCCAATGCACGACCCAACCTAAGACAGTCCTCTAGCACTTTTGAATTTGATGGAACGTCTTCGATGTTCTCTTCAGGTCCTTACTCTGGTCTAAGTGCCTTTGACAATGACAACATTTCTAGGACCGTGGTTTTCTCTGAAGATCTTTGTGAAGGACGATGA 2049 0.4251 MSIGILKKVQGLVQKWMLILSCLVFVIEAGENDKTMEPPSLYDSGSPLPFVVVHDLPLPANLHVSKHVLSHGAPIAALSPVKPPSYGPFTTAGPSALAQPPLSPYASNCCKQDMVLKRGSKDCQCAYPIKLDLFLSNVSQNPNWNDFLDELATQLGLRNTQIELINFYVLSLSTLNISMNITPHKGISFSANEVSKINSSLSMHKVQLNPGLVGGYKLLNLTWFEPPPPSQAPTLAASPVNTPLHHSPTATSSSSSPKRGRHSNLFLILGIAIGIIFIAIISVLIFCLCTFLPKANTPPIDTEKPRTESAISTVGSLPHPTSTRFIAYEELKEATNNFEAASILGEGGFGRVFKGVLNDGTPVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYFINRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFQAKVADFGLAKQAPEGRSNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKERLEEIADPRLGGEYPKEDFVRVCTIAAACVAPEANQRPTMGEVVQSLKMVQRVTEYHDSVLASSNARPNLRQSSSTFEFDGTSSMFSSGPYSGLSAFDNDNISRTVVFSEDLCEGR* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1828 682 CDD STKc_IRAK 344 614 - -
Gso19g1828 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Gso19g1828 682 Gene3D Transferase(Phosphotransferase) domain 1 416 633 - -
Gso19g1828 682 ProSiteProfiles Protein kinase domain profile. 338 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1828 682 MobiDBLite consensus disorder prediction 232 260 - -
Gso19g1828 682 Gene3D Phosphorylase Kinase; domain 1 302 415 - -
Gso19g1828 682 Pfam Protein tyrosine and serine/threonine kinase 341 613 IPR001245 GO:0004672|GO:0006468
Gso19g1828 682 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Gso19g1828 682 PANTHER OS01G0750732 PROTEIN 92 682 - -
Gso19g1828 682 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 92 682 - -
Gso19g1828 682 SUPERFAMILY Protein kinase-like (PK-like) 312 615 IPR011009 -
Gso19g1828 682 MobiDBLite consensus disorder prediction 235 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1828 Gso-Chr19 47002556 47009229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1828 47 682 Receptor kinase-like Gene Family AT4G02010 72.344 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gso19g1828 PK_Tyr_Ser-Thr 9.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1828 - - gmx:100775615 1302.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1828 19 47002556 47009229 Gso3g1866 3 44216653 44224398 GST
Gso19g1828 19 47002556 47009229 Gso2g0100 2 1063646 1071803 PCT
Gso19g1828 19 47002556 47009229 Gso10g0104 10 1120582 1127688 PCT
Gso2g0100 2 1063646 1071803 Gso19g1828 19 47002556 47009229 PCT
Gso10g0104 10 1120582 1127688 Gso19g1828 19 47002556 47009229 PCT