Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1823 ATGGCTGAAGACCAATCTATCATTGGAAAAATGCAGATGTACTATGACAAAAATGGTGGTGAAATGATGATATGCAGTGACAATGAGGAAGAAATGGTGAATCCCAAAGATGCCAAACATGACTTTACGGAGGCTGAAGATCTAATTTTGCGGATGACACTTGAGGAATGCAAGTCTTCTGAGGAGGCATTGAGTATCATACAAGAGTTTGTTAAGACTACTGATTCACAAATTCAGAGTGAAAAGCAACAAGTGTGGTCTGAACATGAAGGTGATAAGCAACCATGCAGTGACCAGTGTTACCTACTGGACAAGGGAGTTATGGAAGGACAAAAAGATATTCAGTTGTCTAATTCAACGAAAGTGCAAGCTGATGAGATGACAAATAACTCAAATTGGAAACAGCTAGAGAAAAATTTATATTTGAAGGGAGTAGAATTGTTTGGAAAAAATAGTTGCCTTGTAGCTCGAAACTTACTTCCTGGCTTTAAGACTTGCTTAGAAGTAGCTAGGTACATGTTTGCTAGTGGAGAGTCAATGCCTTATGAATCCATACCAAGTTCAATCACAGACATAAATGATAAGATTAATGCAGAGTACATAGACCAAGAAATGCCATCAAGATCACGGTTGTTGCGAAAGAAGTGCAAGACTAGAAAGTTTAGTTATTCTCATAAATCTATTGCTCTCTCATCTAGATGCAGAAGAATTGATCATGGGAAAGACCAATGTGATAAGCAATATACTCCATGTGGGTGTAAGGGAATATGCATAGAGGGATGTCCTTGTCTTAGTACGGGAACTTGTGAAAAATACTGTGGGTGTTCAAAGTTATGCAATAATCGATTCAAAGGATGTTATTGTTTTAAGAGTCAATGTAGAAGCCAACTATGTCCATGCTTTGCAGCAAACCGTGAATGTGACCCAGATGTCTGTCGAAATTGTTGGGTTAGTTGCGGTGATGGTTCATTAGGGGAGCCACCTCGACACGGAGATGGTCAATGTGCAAACATGAATCTTCTTTTAGGGAAAAAAGAAAGGATTCTTTTGTCAAAGTCAAATGTTGCAGGATGGGGAGCCTTCACAAAGAACCCAATTATAAAAAATACTTGTCTAGGAGAGTACACAGGTGAACTAATCACTCACAGAGAAGCAGAGAAACGTGGGAAACTATATGACCGTATAAACAATTCATATCTTTTTAACGTCAATGATAAGTGGGTTATTGATGCACGCCGCTTTGGGAATAAGTTAAAATTTGCAAATCACTCATCAAAACCCAACTGCTATGCAAAGGTGATGTTGGTTGGAGGAGATCATCGAGTTGGCATATTTGCCAAGGAAAACATTAAAGCCGGTGATGAGCTTTTCTATCATTATTACTATAATGAAGAGTGTGCACCACCATGGGCTCTTCCACCAAAAGTCGAGGCTTCTAAGACACATAAATATGTTTCTCAGGGCAGGGCAAAGAAACATTGA 1482 0.39 MAEDQSIIGKMQMYYDKNGGEMMICSDNEEEMVNPKDAKHDFTEAEDLILRMTLEECKSSEEALSIIQEFVKTTDSQIQSEKQQVWSEHEGDKQPCSDQCYLLDKGVMEGQKDIQLSNSTKVQADEMTNNSNWKQLEKNLYLKGVELFGKNSCLVARNLLPGFKTCLEVARYMFASGESMPYESIPSSITDINDKINAEYIDQEMPSRSRLLRKKCKTRKFSYSHKSIALSSRCRRIDHGKDQCDKQYTPCGCKGICIEGCPCLSTGTCEKYCGCSKLCNNRFKGCYCFKSQCRSQLCPCFAANRECDPDVCRNCWVSCGDGSLGEPPRHGDGQCANMNLLLGKKERILLSKSNVAGWGAFTKNPIIKNTCLGEYTGELITHREAEKRGKLYDRINNSYLFNVNDKWVIDARRFGNKLKFANHSSKPNCYAKVMLVGGDHRVGIFAKENIKAGDELFYHYYYNEECAPPWALPPKVEASKTHKYVSQGRAKKH* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1823 493 Pfam CXC domain 285 316 IPR041355 -
Gso19g1823 493 SMART CXC_2 281 318 IPR033467 -
Gso19g1823 493 Pfam SET domain 357 460 IPR001214 GO:0005515
Gso19g1823 493 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 79 121 IPR045318 GO:0006338|GO:0018024
Gso19g1823 493 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 110 493 IPR045318 GO:0006338|GO:0018024
Gso19g1823 493 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 1 80 IPR045318 GO:0006338|GO:0018024
Gso19g1823 493 ProSiteProfiles SET domain profile. 346 461 IPR001214 GO:0005515
Gso19g1823 493 SMART set_7 346 469 IPR001214 GO:0005515
Gso19g1823 493 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 80 - -
Gso19g1823 493 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 79 121 - -
Gso19g1823 493 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 110 493 - -
Gso19g1823 493 SUPERFAMILY SET domain 219 464 IPR046341 -
Gso19g1823 493 CDD SET_EZH 346 462 - -
Gso19g1823 493 Gene3D SET domain 248 462 IPR046341 -
Gso19g1823 493 ProSiteProfiles CXC domain profile. 234 332 IPR026489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1823 Gso-Chr19 46958383 46965076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1823 335 460 C2H2 Transcription Factor Family AT2G23740 29.371 1.39e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso19g1823 SET 3.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1823 - K11430 gsj:114398888 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1823 19 46958383 46965076 Gso3g1859 3 44175306 44182973 GST
Gso19g1823 19 46958383 46965076 Gso2g0105 2 1099460 1108776 PCT
Gso19g1823 19 46958383 46965076 Gso10g0112 10 1190709 1200722 PCT
Gso2g0105 2 1099460 1108776 Gso19g1823 19 46958383 46965076 PCT
Gso10g0112 10 1190709 1200722 Gso19g1823 19 46958383 46965076 PCT