Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1808 ATGGTAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAGGGAAGGTGGACAACGGAGGAGGATGAAATTTTGACCAAGTACATTATGGCCAATGGAGAAGGTTCGTGGAGATCATTGCCGAAAAATGCAGGATTGTTGAGATGCGGGAAGAGTTGCAGGCTAAGGTGGATTAACTATCTAAGAGCTGATCTCAAAAGAGGAAACTTTTCTGTTGAGGAGGAAAGTACCATTCTGAAGTTGCATGCTTCGTTTGGCAGCAGCTGGTCGTTGATAGCAAGTCATTTACCTGGAAGAACAGACAACGAGATAAAAAACTACTGGAACTCTCATTTGAGCAGAAAAATTTACACTTTCCATGGGAAAACAACTTCTAAAGGCATCATCACCCTACCTCCTCGGCGCAAACGTGGTAGAACCAGCCGCTGGGCCATGAAGAACAAAAACCAAAAGGGTAGTAGTAGTACACAACAACAACAACAACAAATTCATCATCATCTCAATAATGAAGTAGCAGTTCCTCTCCCTCCAAAACCCCCACTTGAGACCGAGAAATATTTGTCCACCAATATAATATTAATGGAGGAGCAAGTTGATGGGTCGAGCACTGCTAGTACAATAACCAATGATCATAAACATGAAAACACTACTACTATGTGTGTTGAAGGCGAGAAAGAAGAAATATTAAATGACGACATATGGGGGCCGTATGTTGAGGAAGTTATTAACGGGGGAGAGTTAGTGTTAAATTTTGATGATTTCATGGACCATTGCTGGCAGGAAGCAAGTGGGGTTTGGACCATTTCTGATGAACAAAGAGAGAGCAATATCAATATTGTGGTTGGGAATGAAAAAGTTGATGACGACATGTGTACGAACGTAATTATGTCGAGTGGGGATCATGATCGGTTGCATTCTTCCTCTTCCATTGCTTCGGACTTGGATCAAAACCTCCTCACTTGGCTGTGGGAAGATGAAGATTGGGAGAAGGATCTTCAGAGCCTTGGAGAGATTCATAGTGACAAATTAAAAGCTATGGTTGATTGGTTTCTCTCTTCAAGTTAA 1065 0.4207 MVRAPCCEKVGLKKGRWTTEEDEILTKYIMANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNFSVEEESTILKLHASFGSSWSLIASHLPGRTDNEIKNYWNSHLSRKIYTFHGKTTSKGIITLPPRRKRGRTSRWAMKNKNQKGSSSTQQQQQQIHHHLNNEVAVPLPPKPPLETEKYLSTNIILMEEQVDGSSTASTITNDHKHENTTTMCVEGEKEEILNDDIWGPYVEEVINGGELVLNFDDFMDHCWQEASGVWTISDEQRESNINIVVGNEKVDDDMCTNVIMSSGDHDRLHSSSSIASDLDQNLLTWLWEDEDWEKDLQSLGEIHSDKLKAMVDWFLSSS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1808 354 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso19g1808 354 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso19g1808 354 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso19g1808 354 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 331 - -
Gso19g1808 354 MobiDBLite consensus disorder prediction 145 164 - -
Gso19g1808 354 CDD SANT 69 112 IPR001005 -
Gso19g1808 354 CDD SANT 16 61 IPR001005 -
Gso19g1808 354 Gene3D - 11 67 - -
Gso19g1808 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso19g1808 354 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso19g1808 354 Gene3D - 69 116 - -
Gso19g1808 354 SMART sant 13 63 IPR001005 -
Gso19g1808 354 SMART sant 66 114 IPR001005 -
Gso19g1808 354 PANTHER MYB TRANSCRIPTION FACTOR 2 331 - -
Gso19g1808 354 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso19g1808 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso19g1808 354 MobiDBLite consensus disorder prediction 127 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1808 Gso-Chr19 46799340 46803716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1808 1 148 MYB Transcription Factor Family AT2G47460 67.702 3.12e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g1808 Myb_DNA-binding 5.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1808 K09422 - gmx:100817316 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1808 19 46799340 46803716 Gso3g1843 3 44042349 44046468 GST
Gso19g1808 19 46799340 46803716 Gso2g0121 2 1258719 1263142 PCT
Gso19g1808 19 46799340 46803716 Gso10g0130 10 1349130 1354016 PCT
Gso2g0121 2 1258719 1263142 Gso19g1808 19 46799340 46803716 PCT
Gso10g0130 10 1349130 1354016 Gso19g1808 19 46799340 46803716 PCT