Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1800 ATGGCGACGAGAAATCGAACAATAGAATTTAGAAAACACAGAGACGCCGTGAAGAGCGTGCGCGCTCCTCTATCCTCCTCGGCATCTGCCTCCACCGGCCCCGTCATCGAAATGGTTACCACTTCGCTTCTTCCTCCCAATCGATCCTCCTCCTATGCTCTTCTAAGCACACAGGAACCTGCTCCATCCACTTCTAGGGATGCGTTTACTGTGGGGTTGCCGCCATCTTGGGTGGATGATTCTGAAGAAATAGCTACGAACATACAACGTGCTAGGGTTAAAATTTCTGAGTTAACCAAAGCTCATGCGAAGGCTTTGATGCCATCCTTTGGGGATGGCAAAGAGGATCAGCGTCATATTGAGACTCTCACCCAGGAAATTACGTCTCTCCTCAGAAAGTCTGAAGTGAGGCTCAGAAGACTTTCTGCTGCTGCTGGATCTTCTGAGGATTCTAATGTTAGGAAAAATGTGCAGCGTTCCCTTGCTACAGATCTTCAGAACCTGTCAATGGATCTCCGGCGAAAACAGTCAGCATATTTGAAACGTTTGCAGCAGCAACAAGAGGGTTATGATGGGATTGACTTGGAGATGAGCTTTACTGGGAGCAAATTTGGATCGCAAAATGATGAATTCAGTGATGTGGGTTTTAGTGAAGAGCAAATGACAAAGCTAAAGAGAAGTGAGCAGTTCTCAGAGGAAAGGGAAAGAGAGATTGAACAGGTTGTCAAATCAGTCCATGAGCTTGCTCAAATCATGAAGGATCTCTCTGTCCTTGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTACAACATTCAGAGTGTTTCTACATCCGTTGAAGAGGGTCTTAAGCAGTTGCAAAAGGCAGAGAGAACACAGAAAAAAGGAGGGATGGTTATGTGTGCAACAACACTTGTTATAATGTGCTTTGTCATGCTAGTTCTCTTGATACTCAAGGAGATCCTCTTCTAG 975 0.4533 MATRNRTIEFRKHRDAVKSVRAPLSSSASASTGPVIEMVTTSLLPPNRSSSYALLSTQEPAPSTSRDAFTVGLPPSWVDDSEEIATNIQRARVKISELTKAHAKALMPSFGDGKEDQRHIETLTQEITSLLRKSEVRLRRLSAAAGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSAYLKRLQQQQEGYDGIDLEMSFTGSKFGSQNDEFSDVGFSEEQMTKLKRSEQFSEEREREIEQVVKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEEGLKQLQKAERTQKKGGMVMCATTLVIMCFVMLVLLILKEILF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1800 324 Pfam SNARE domain 264 316 IPR000727 -
Gso19g1800 324 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 290 IPR000727 -
Gso19g1800 324 CDD SNARE_syntaxin16 232 289 - -
Gso19g1800 324 Gene3D - 74 282 - -
Gso19g1800 324 SMART tSNARE_6 223 290 IPR000727 -
Gso19g1800 324 ProSitePatterns Syntaxin / epimorphin family signature. 234 273 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso19g1800 324 PANTHER SYNTAXIN 1 319 IPR045242 -
Gso19g1800 324 SMART SynN_4 68 184 IPR006011 GO:0016020
Gso19g1800 324 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 319 - -
Gso19g1800 324 SUPERFAMILY t-snare proteins 73 283 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1800 Gso-Chr19 46744058 46747886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1800 1 324 SNARE and Associated Proteins AT5G26980 68.389 1.31e-158 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1800 K08489 - gmx:100803629 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1800 19 46744058 46747886 Gso3g1834 3 43983871 43987544 GST