Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1798 ATGACTGCCGACACCCACGCCGCTCCTAATATCAATCCCAAGGGCCTCCTCTGCAATGCCGCCGCCGGTGCTTCCGCCGGGGTTATTGCTGCTACATTTGTGTGTCCTTTAGATGTCATCAAAACTAGGTTTCAGGTTCACGGTGTCCCGCAGCTCGCGCATCGAAGTGCTAAAGGCAGCATAATAGTTGCTAGTTTGGAACAAGTGTTTCACAAGGAGGGATTACGTGGCATGTACCGTGGACTCGCGCCCACTGTGCTGGCTTTACTTCCAAATTGGGCGGTTTATTTTAGTGCATATGAGCAGCTTAAGAGCCTTCTTCAGTCTGATGATAGCCATCATCTTTCAATTGGAGCTAATATGATAGCTGCTTCTGGTGCTGGAGCTGCGACTACCATGTTTACAAATCCCCTTTGGGTTGTCAAGACTAGACTCCAAACACAGGGAATGAGACCTGGTGTTGTGCCATATAGGGGCACACTATCTGCATTGAGGAGAATTGCACACGAGGAGGGCATTCGAGGGCTGTACAGTGGCCTTGTTCCTGCTCTGGCTGGTATCAGTCATGTTGCCATCCAATTTCCTACATATGAGACAATAAAATTTTATTTGGCAAATCAAGATGACACAGCAATGGAAAAACTTGGTGCACGTGATGTTGCAATTGCATCATCAGTTTCCAAAATTTTTGCATCCACGTTGACATATCCTCATGAGGTTGTACGTTCCAGACTGCAAGAACAAGGGCATCATTCGGAGAAACGGTACTCTGGTGTGATTGATTGTATTAGAAAGGTTTTTCATCAAGAAGGTGTATCAGGCTTTTACCGAGGCTGTGCCACCAATCTTCTGAGGACAACGCCAGCTGCTGTGATTACATTCACCAGCTTTGAAATGATACACCGATTTCTTGTTTCTTATTTTCCTTCTGATCCACGGCCTCATATTTTGTGA 954 0.4633 MTADTHAAPNINPKGLLCNAAAGASAGVIAATFVCPLDVIKTRFQVHGVPQLAHRSAKGSIIVASLEQVFHKEGLRGMYRGLAPTVLALLPNWAVYFSAYEQLKSLLQSDDSHHLSIGANMIAASGAGAATTMFTNPLWVVKTRLQTQGMRPGVVPYRGTLSALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPTYETIKFYLANQDDTAMEKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVIDCIRKVFHQEGVSGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSYFPSDPRPHIL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1798 317 Gene3D Mitochondrial carrier domain 111 307 IPR023395 -
Gso19g1798 317 PRINTS Mitochondrial carrier protein signature 19 32 IPR002067 GO:0055085
Gso19g1798 317 PRINTS Mitochondrial carrier protein signature 32 46 IPR002067 GO:0055085
Gso19g1798 317 PRINTS Mitochondrial carrier protein signature 81 101 IPR002067 GO:0055085
Gso19g1798 317 PRINTS Mitochondrial carrier protein signature 130 148 IPR002067 GO:0055085
Gso19g1798 317 PRINTS Mitochondrial carrier protein signature 224 246 IPR002067 GO:0055085
Gso19g1798 317 Pfam Mitochondrial carrier protein 115 206 IPR018108 -
Gso19g1798 317 Pfam Mitochondrial carrier protein 15 109 IPR018108 -
Gso19g1798 317 Pfam Mitochondrial carrier protein 221 306 IPR018108 -
Gso19g1798 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 303 IPR018108 -
Gso19g1798 317 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 316 IPR044712 GO:0006862|GO:0055085
Gso19g1798 317 Gene3D Mitochondrial carrier domain 2 110 IPR023395 -
Gso19g1798 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 115 203 IPR018108 -
Gso19g1798 317 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 316 - -
Gso19g1798 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 106 IPR018108 -
Gso19g1798 317 SUPERFAMILY Mitochondrial carrier 15 299 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1798 Gso-Chr19 46721988 46726278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1798 1 311 Chloroplast and Mitochondria Gene Families AT2G47490 75.241 3.03e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1798 K15115 - gmx:100803094 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1798 19 46721988 46726278 Gso3g1831 3 43950398 43954901 GST