Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1797 ATGGCGGCAGAGGCGGCGTTGTTCTTTTCTGTGGCATCAGTGGTGGAGGACGTGCTTCAGCAGCACGGTCCTCGCCTCAAAGATCTTGATTTGGAATCTAGGAAAGCTGAAGAAGCTGCATCAAGAAGATATGAAGCGGCGGGGTGGTTGAGAAAAATGGTTGGAGTTGTAGCAGCCAAAGATTTACCAGCAGAGCCCTCTGAGGAAGAGTTTAGGCTTGGTTTGAGAAGTGGGATTATTCTCTGTAATGTTATTAATAAAGTTCAATCCGGGGCTGTTCCCAAGGTTGTGGAGAGTCCTGTTGATTCTGCATTGATCCCTGATGGGGCACCATTAACCGCATATCAGTATTTTGAAAACGTGAGGAATTTTCTGGTAGCTGTCCAAGAAATTGGAATTCCTACCTTTGAGGCATCTGATCTGGAACAAGGAGGAAAATCATCTAGGATTGTCAATTGCGTGTTGGCCCTGAAATCTTACAGTGAATGGAAAATGAGCGGGTCAAATGGTGTGTGGAAATTTGGTGGAAATCTCAAACCCACTGTGACTTCAAAATCTTTTGTGAGAAAAAATTCGGATCCATTTACTAATTCCTTGTCAAGGACTTCGTCGCTCAATGATAAATCTATTGCTGCTTTTAATTCTGACGTCGAGTCTATTAAAATGTCTGGTTCCCACTCTTTGAGTATGCTTGTTCGGGCAATTTTATCGGATAAGAAGCCAGAAGAAGTTCCAACTTTGGTGGAATCTGTTTTAAACAAGGTTGTAGAGGAGTTTGAGCAACGAATTGCAAGCCAAGGTGAACAGGGGGAGAAGAAGATTCATGTGGTAACGAAAAAAGAGGATTGCATTAATAAAAATGAAGTTGCTACTATGGTAACACAAAGGCAACTTATGAAGCAGCAAATGCTCTTCGACCAGCAGCAAAGAGAAATTCAGGAGCTAAGGCATAGTCTTCACTCCACAAAAGATGGTATGCAGTTCATGCAAATGAAATTTCACGAAGACTTCTCCAATCTTGGCACGCACATTCATGGCTTAGCTAATGCTGCTTCTGGATATCATAGAGTTCTTGAAGAAAATCGCAAACTATACAATCAAGTCCAGGATCTTAAGGGAAGTATTAGGGTGTACTGTCGAGTAAGACCCTTCTTTCCTGGACAATCAAACCATTTGAGTGCAGTGGAAAATATAGAAGATGGAACCATCACAGTTAATATTCCTTCAAAGAATGGGAAGGGACGAAGGTCCTTCAACTTTAACAAAATTTTTGGACCATCTGCTACCCAAGCCGAGGTCTTCCTAGATATGCAGCCACTCGTTAGGTCTGTTCTTGATGGTTTTAATGTTTGCATATTTGCATATGGCCAAACAGGATCAGGAAAAACTTACACTATGACTGGACCCAAAGAGATCACAGAGAAAAGCCAAGGTGTAAATTACAGGGCTCTAAGTGATTTGTTTCTTATAGCAGATCAAAGGAGGGACACTGTCCACTATGACGTTTCTGTTCAAATGATTGAGATTTACAATGAGCAAGTCAGGGATCTGCTGGTCACTGATGGAACAAACAAAAGATTAGAAATTCGAAGTAGTTCACAAAAAGGACTCAGCGTGCCAGATGCAAGCCTTGTCCCTGTATCATCTACTATTGATGTTATTGAACTAATGAACCTTGGTCAAAGGAACCGTGCTGTTGGAGCAACAGCCCTTAATGACCGCAGTAGCCGATCTCATAGTTGCTTGACTGTTCATGTTCAAGGAAGAGATTTGGCATCTGGAGCAATCCTTCGTGGATGCATGCATTTGGTTGACTTGGCAGGAAGTGAGAGAGTGGATAAGTCTGAGGCTACAGGAGATAGACTTAAAGAAGCACAGCATATTAACAAATCTCTTTCAGCTTTGGGAGATGTCATTGCTTCCCTTGCTCAGAAAAACTCTCACGTACCTTACAGAAATAGTAAACTCACACAACTACTCCAAGATTCACTTGGAGGACAGGCTAAGACACTAATGTTTGTTCACATAAGTCCAGAGAGTGATGCTATTGGAGAAACAATTAGTACCTTAAAATTTGCTGAAAGAGTTGCCACAGTTGAACTTGGTGCTGCTCGAGTAAACAAAGATAGTGCAGATGTTAAAGAACTCAAAGAACAGATTGCCAGCCTCAAGGCAGCACTGGCAAGAAAGGAAGGAGAATCAGAACATTCTTTTTTGGGCAGCTCTGAAAAACATAGAACAAAGGCTAGTGAGCTATCACCTTATCATATAAACCAGCGAGGTCCTGACGCTGTGGATCAGCTTGGATGCCGGCAACCAATGGTTGAGGTTGGCAACATAGAACTTCGGAGTAATACCACAGTGAGGCTCAAAACTCAGAGCTTTGATTTTGATGAGATATCAGCAAATTCACCATCATGGCCCCCAGTGAACAATAGTCTTGCACAAAACTATGGGGAGGATGACAAAGAATCTGGTGGTTCTGGAGAATGGGTTGATAAGGTCATGGTCAACAAGCAAGATGTAAACAAAACTGAGAACCTCTTGGGATGTTGGCAAGCAGCAAGCAATGGGAACTTATCTGAGGCCTTTTATCAGAAATACCTCAAAGATTCTCCCAAAATGTACTCAGAACAATCCGATAATATGTTCATGGGAGCCAATCAGTTTAACATTGCCGGTTCAGATGACATGGATGAGCTTGATGCTGCAACCAGTGATTCCTCAGAACCTGACTTACTTTGGCAATTTAATCATTCCAAACTTAGCAGCGTGACCAATGGAATTGGATCAAAGACTATGAGGTCTAAGGCAGCAAAAAACAGCCCTGAGTTGAGCAAGAGTGCTGTTCATTCTTCTCCTCTAGGTCCTTCACCTTCATTGAAAAACTCAAATGGTGTCCCACATCGAACAGGGAGGCATACAGCTCCAGTTGACGTGAAACGTAGAACTGGGAGTAGAAAATAA 2967 0.424 MAAEAALFFSVASVVEDVLQQHGPRLKDLDLESRKAEEAASRRYEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGIILCNVINKVQSGAVPKVVESPVDSALIPDGAPLTAYQYFENVRNFLVAVQEIGIPTFEASDLEQGGKSSRIVNCVLALKSYSEWKMSGSNGVWKFGGNLKPTVTSKSFVRKNSDPFTNSLSRTSSLNDKSIAAFNSDVESIKMSGSHSLSMLVRAILSDKKPEEVPTLVESVLNKVVEEFEQRIASQGEQGEKKIHVVTKKEDCINKNEVATMVTQRQLMKQQMLFDQQQREIQELRHSLHSTKDGMQFMQMKFHEDFSNLGTHIHGLANAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFFPGQSNHLSAVENIEDGTITVNIPSKNGKGRRSFNFNKIFGPSATQAEVFLDMQPLVRSVLDGFNVCIFAYGQTGSGKTYTMTGPKEITEKSQGVNYRALSDLFLIADQRRDTVHYDVSVQMIEIYNEQVRDLLVTDGTNKRLEIRSSSQKGLSVPDASLVPVSSTIDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHVQGRDLASGAILRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNSHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPESDAIGETISTLKFAERVATVELGAARVNKDSADVKELKEQIASLKAALARKEGESEHSFLGSSEKHRTKASELSPYHINQRGPDAVDQLGCRQPMVEVGNIELRSNTTVRLKTQSFDFDEISANSPSWPPVNNSLAQNYGEDDKESGGSGEWVDKVMVNKQDVNKTENLLGCWQAASNGNLSEAFYQKYLKDSPKMYSEQSDNMFMGANQFNIAGSDDMDELDAATSDSSEPDLLWQFNHSKLSSVTNGIGSKTMRSKAAKNSPELSKSAVHSSPLGPSPSLKNSNGVPHRTGRHTAPVDVKRRTGSRK* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1797 988 MobiDBLite consensus disorder prediction 925 988 - -
Gso19g1797 988 Pfam Calponin homology (CH) domain 41 162 IPR001715 GO:0005515
Gso19g1797 988 SMART kinesin_4 372 707 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso19g1797 988 MobiDBLite consensus disorder prediction 974 988 - -
Gso19g1797 988 MobiDBLite consensus disorder prediction 925 970 - -
Gso19g1797 988 CDD KISc_C_terminal 372 701 - -
Gso19g1797 988 ProSiteProfiles Calponin homology (CH) domain profile. 40 162 IPR001715 GO:0005515
Gso19g1797 988 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 985 - -
Gso19g1797 988 Gene3D Kinesin motor domain 369 740 IPR036961 -
Gso19g1797 988 SUPERFAMILY Calponin-homology domain, CH-domain 38 172 IPR036872 -
Gso19g1797 988 SMART ch_5 42 160 IPR001715 GO:0005515
Gso19g1797 988 Coils Coil 706 733 - -
Gso19g1797 988 PRINTS Kinesin heavy chain signature 447 468 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso19g1797 988 PRINTS Kinesin heavy chain signature 569 586 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso19g1797 988 PRINTS Kinesin heavy chain signature 600 618 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso19g1797 988 PRINTS Kinesin heavy chain signature 649 670 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso19g1797 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 731 IPR027417 -
Gso19g1797 988 Pfam Kinesin motor domain 380 698 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso19g1797 988 Gene3D - 27 184 IPR036872 -
Gso19g1797 988 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 2 985 - -
Gso19g1797 988 ProSiteProfiles Kinesin motor domain profile. 374 699 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1797 Gso-Chr19 46702251 46710124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1797 362 751 Calmodulin-binding Proteins AT5G65930 41.221 1.10e-77 275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1797 19 46702251 46710124 Gso3g1830 3 43932788 43938804 GST
Gso19g1797 19 46702251 46710124 Gso2g0133 2 1374820 1381577 PCT
Gso19g1797 19 46702251 46710124 Gso10g0586 10 6805603 6809484 PCT
Gso2g0133 2 1374820 1381577 Gso19g1797 19 46702251 46710124 PCT
Gso10g0586 10 6805603 6809484 Gso19g1797 19 46702251 46710124 PCT