Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1792 ATGTGTGGCGGAGCAATCATCGCAGATTTCATACCTCGGCAGCGTCCCCGCACCCTCACAGCCTCCGAACTCTGGCCCAAGCGCAGCGAACCTCAACCTCAACCTCCTCCTCCTCCAGTTAAGAGGCAGAGGAAAAACCTCTACAGAGGGATCAGGCAGCGGCCCTGGGGCAAATGGGCCGCGGAGATTCGCGATCCACGTAAAGGAGTTCGTGTCTGGCTTGGCACCTTCAACACCGCCGAAGAAGCCGCCAGAGCCTACGACAAAGAAGCCCGAAAAATCCGCGGCAAGAAAGCCAAAGTCAATTTCCCCAACGAGGACGACCCTCTGCCGCAATACGGATCTTGCAAGAGCCTCAACTTGGAGTTCGGTTACGATCTCAACCAAACAGGGCTTTTCCCTTCTTCTAACGCTGATGAGAATTGCGGGTCCCACGTGGCTTACTCCGTTACGGAAGCCAACAACAAAGTAGAGAAGCTTTCCGAGGAGCTTATGGCGTACGAGAATTTAATGAGGTTTTATCAGATTCCGGAAAACGTCGTTGGGGATTTGTGGGCCTTTCCTGACACCTCTCCACCTCTCTGA 585 0.5419 MCGGAIIADFIPRQRPRTLTASELWPKRSEPQPQPPPPPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEDDPLPQYGSCKSLNLEFGYDLNQTGLFPSSNADENCGSHVAYSVTEANNKVEKLSEELMAYENLMRFYQIPENVVGDLWAFPDTSPPL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1792 194 CDD AP2 48 105 IPR001471 GO:0003700|GO:0006355
Gso19g1792 194 PANTHER EREBP TRANSCRIPTION FACTOR 40 115 - -
Gso19g1792 194 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
Gso19g1792 194 Coils Coil 150 170 - -
Gso19g1792 194 Pfam AP2 domain 48 96 IPR001471 GO:0003700|GO:0006355
Gso19g1792 194 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Gso19g1792 194 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Gso19g1792 194 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Gso19g1792 194 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Gso19g1792 194 MobiDBLite consensus disorder prediction 18 47 - -
Gso19g1792 194 PANTHER DNA-BINDING DOMAIN 40 115 IPR044808 GO:0003700|GO:0009873
Gso19g1792 194 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1792 Gso-Chr19 46665797 46666612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1792 1 191 AP2-EREBP Transcription Factor Family AT2G47520 48.000 5.04e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso19g1792 AP2 7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1792 K09286 - gmx:100527371 395.201