Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1787 ATGCCAGCAACCAACCACCCTATTTATCCACTTCAGACTTCACACTCAACCAAATCACAGTATCACTTACCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATATATATATATATATATACCATGTATAGCCCCATTAGCAGAAAAAAACCACCAATGGAGTCTCACGTAGACACCATTCTCTCTGCAATTTTTGTTCTACTCCTTTCTTCGTTAACCCATTTCAGCATCACCGCAAATGCAACAAGAACACCCCAAGAAAACAGCCTCCATTTCCAAGTAGCAAACTCCACATGCGAGGGAACACTCTACTCCGACCTCTGTGTCTCAACCCTTGCCTCATTCCCAGATCTCACCTCAAAAACCCTCCCACAAATGATACGCTCTGTCGTGAACCACACAATATACGAGGTCACATTGTCGGCCTCCAACTGCAGCGGCCTCCGAAGGAACCTCCCGAAACTCGACAAACTCGAACAGAGAGCCCTCGACGACTGTCTCAATCTCTTCGACGACACCGTTTCGGAGCTCGAAACCACCATCGCGGATCTCTCACAGAGCACAATAGGACCGAAGCGTTACCACGACGCACAGACTTTGTTGAGTGGCGCAATGACCAACTTGTACACGTGTCTTGATGGCTTTGCGTACAGTAAAGGGCACGTGAGGGACAGGTTTGAGGAGGGGCTGTTGGAGATTTCGCATCACGTTAGTAACTCGCTCGCCATGCTGAAGAAATTGCCAGCAGGAGTGAAGAAATTGGCGTCCAAGAATGAGGTTTTCCCTGGATATGGTAAGATCAAAGACGGCTTTCCAACGTGGCTATCAACCAAGGATAGAAAATTGCTTCAGGCTGCTGTGAATGAAACAAACTTCAATCTTCTTGTGGCCAAAGATGGCACTGGCAACTTCACCACCATTGCCGAAGCAGTGGCTGTGGCTCCCAACTCCAGCGCAACTAGATTTGTGATACACATAAAAGCCGGGGCATACTTCGAGAATGTGGAGGTAATCAGGAAGAAGACCAATCTGATGTTCGTCGGAGATGGGATTGGAAAGACTGTTGTGAAGGCCAGTAGGAATGTTGTGGATGGCTGGACCACTTTCCAATCAGCCACTGTTGCTGTGGTTGGAGACGGATTCATAGCAAAGGGTATAACCTTTGAAAATTCTGCTGGGCCAAGCAAACACCAAGCCGTGGCCCTAAGGAGTGGTTCTGATTTCTCAGCCTTCTATAAATGCAGCTTCGTTGCCTACCAAGATACTCTCTATGTCCACTCCCTGCGCCAATTCTACCGCGATTGTGACGTTTATGGCACAGTCGACTTCATCTTCGGCAATGCAGCAACAGTGCTCCAGAACTGCAACTTGTACGCACGCAAGCCCAATGAAAACCAAAGGAACTTGTTCACTGCACAAGGAAGAGAAGACCCTAACCAAAACACCGGCATTTCCATCTTGAACTGCAAGGTTGCAGCAGCTGCTGATTTAATCCCGGTCAAATCTCAGTTCAAGAACTACTTGGGTCGTCCTTGGAAGAAGTATTCGAGAACTGTTTATCTTAATTCTTACATGGAGGATCTGATAGACCCCAAAGGGTGGTTGGAGTGGAATGGCACGTTTGCATTGGATACGTTGTATTATGGAGAGTACAACAATAGGGGTCCCGGTTCAAACACAAGTGCAAGAGTTACGTGGCCTGGTTATAGGGTTATCAAGAACGCCACTGAGGCAAACCAGTTCACAGTTCGCAATTTCATTCAAGGGAATGAATGGTTGAGTTCCACCGACATTCCATTCTTCTCTGATTTCAGTTGA 1851 0.4684 MPATNHPIYPLQTSHSTKSQYHLPSSSSSSSSSSSSSSSSSSSSSIYIYIYTMYSPISRKKPPMESHVDTILSAIFVLLLSSLTHFSITANATRTPQENSLHFQVANSTCEGTLYSDLCVSTLASFPDLTSKTLPQMIRSVVNHTIYEVTLSASNCSGLRRNLPKLDKLEQRALDDCLNLFDDTVSELETTIADLSQSTIGPKRYHDAQTLLSGAMTNLYTCLDGFAYSKGHVRDRFEEGLLEISHHVSNSLAMLKKLPAGVKKLASKNEVFPGYGKIKDGFPTWLSTKDRKLLQAAVNETNFNLLVAKDGTGNFTTIAEAVAVAPNSSATRFVIHIKAGAYFENVEVIRKKTNLMFVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGDGFIAKGITFENSAGPSKHQAVALRSGSDFSAFYKCSFVAYQDTLYVHSLRQFYRDCDVYGTVDFIFGNAATVLQNCNLYARKPNENQRNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKSQFKNYLGRPWKKYSRTVYLNSYMEDLIDPKGWLEWNGTFALDTLYYGEYNNRGPGSNTSARVTWPGYRVIKNATEANQFTVRNFIQGNEWLSSTDIPFFSDFS* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1787 616 MobiDBLite consensus disorder prediction 7 42 - -
Gso19g1787 616 Pfam Pectinesterase 305 601 IPR000070 GO:0030599|GO:0042545
Gso19g1787 616 Pfam Plant invertase/pectin methylesterase inhibitor 107 254 IPR006501 GO:0004857
Gso19g1787 616 MobiDBLite consensus disorder prediction 1 42 - -
Gso19g1787 616 Gene3D - 299 615 IPR012334 -
Gso19g1787 616 PANTHER PECTINESTERASE 76 613 - -
Gso19g1787 616 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 107 258 IPR035513 -
Gso19g1787 616 ProSitePatterns Pectinesterase signature 2. 448 457 IPR033131 -
Gso19g1787 616 PANTHER PECTINESTERASE 76 613 - -
Gso19g1787 616 SMART PMEI_2 101 254 IPR006501 GO:0004857
Gso19g1787 616 TIGRFAM PME_inhib: pectinesterase inhibitor domain 73 258 IPR006501 GO:0004857
Gso19g1787 616 CDD PMEI-like_3 108 260 - -
Gso19g1787 616 SUPERFAMILY Pectin lyase-like 303 613 IPR011050 -
Gso19g1787 616 Gene3D Invertase/pectin methylesterase inhibitor family protein 104 259 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1787 Gso-Chr19 46629261 46634569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1787 131 611 Carbohydrate Esterase AT4G02300 56.122 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1787 K01051 - gmx:100813592 1199.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0142 2 1467870 1473044 Gso19g1787 19 46629261 46634569 PCT