Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1786 ATGGCTTTCAAGAACTTGTCCGCTCTTACTCTCTGTGTTTCCCTTGTACTACCCTTCTTGACACCGATTTCCATAGCGGCTAATAACCGTGCAGTGGTTCCACCAGAAACCATTTGCAACTCCACCGTAAATCCTTCCTTCTGCAAAACTGTGCTTGTTAATCAAAATGGCAGCATCGTTGACTATGGTCGAATTTCTGTGCGAAAGTCCTTGTCCCAGTCCCGAAAATTCTTGAACTCGGTAAATTCATTTCTTCAAGGCAAATCCACTTTGTCTCTACCCACAATTCGAGCCCTTGAAGACTGTCAATTCCTTGCTGAACTAAACTTCGAATACTTATCAAACGCACTTGATGCTGTTGATAAAGTTAGCAATGTTCTTCCCACCAATCAAGCCGAAGATCAACAAACCCTTCTTAGTGCTGTTTTGACAAACGAAGAAACTTGTTTAGAAGGCTTGCAGCAGACCACAACTTCTGATCAAAGAGTGAAGAGTGATCTTATCTCATCACTCTCTAATGACAAAAAGCTCCACAGTGTTTCTCTTGGCTTGTTCACCAAGGGTTGGGTGCCTGAGAAGAAAATCTCAACATCATGGAAAACCAATGGGAGACATTTGGGTTTCCGCAATGGTCGTTTACCATTGAAGATGTCAAACCGTGTACGTGCCATTTATGATTCTGCTAGAGGTCACGGGAGAAAACTACTTCAAGATAACAGCCAAAGTGTGTTGGTTAGGGACATTGTGGTTGTTAGCCAGGATGGAAGCGGAAACTTCACCACTATCAATGATGCCATAGCAGCTGCGCCAAATAACACAGTTGCTAGTGATGGCTACTTTTTAATTTTTGTCACTCAAGGTGTGTATCAAGAATATATATCCATAGCTAAAAACAAAAAGAACTTGATGATGGTTGGAGATGGGATCAATCAAACGATTATCACCGGTGATCACAATGTTGTCGATAATTTCACAACATTCAACTCAGCAACATTTGCTGTGGTCGCACAAGGGTTTGTAGCAGTTAACATAACATTCCGAAACACTGCTGGGCCAAGTAAGCACCAAGCAGTTGCAGTGAGAAACGGAGCTGATATGTCCACCTTCTACAGCTGCAGCTTTGAAGGGTATCAAGACACCTTGTACACGCATTCCCTTAGACAATTTTACCGTGAATGTGACATCTACGGCACCGTTGACTTCATATTTGGAAATGCTGCTGTTGTTCTCCAAACATGTAACCTATATCCCCGCCTTCCCATGAGTGGACAATTCAATGCCATCACAGCACAAGGCAGAACAGACCCAAATCAAAACACAGGCACTTCCATACATAATGCCACTATAAAACCTGCTGCTGATTTGGCTCCTTCAGTTGGCATTGTGAAAACGTACCTTGGGAGACCATGGAAAGAGTACTCAAGAACGGTTTATATGCAGTCTTTCATGGACAGTTTCATAAATCCTTCTGGTTGGCGTGAATGGAGTGGAGATTTTGCCCTAAGCACCTTGTACTATGCAGAATATAATAATACGGGACCTGGTTCAAACACCACAAACAGAGTGACGTGGCCTGGTTATCATGTTATCAATGCTACTGATGCGGCTAATTTTACCGTGTCTAACTTCTTGGACGGAGATAATTGGCTGCCTCAAACTGGAGTTCCATACATTAGTGGATTGATATAG 1689 0.4281 MAFKNLSALTLCVSLVLPFLTPISIAANNRAVVPPETICNSTVNPSFCKTVLVNQNGSIVDYGRISVRKSLSQSRKFLNSVNSFLQGKSTLSLPTIRALEDCQFLAELNFEYLSNALDAVDKVSNVLPTNQAEDQQTLLSAVLTNEETCLEGLQQTTTSDQRVKSDLISSLSNDKKLHSVSLGLFTKGWVPEKKISTSWKTNGRHLGFRNGRLPLKMSNRVRAIYDSARGHGRKLLQDNSQSVLVRDIVVVSQDGSGNFTTINDAIAAAPNNTVASDGYFLIFVTQGVYQEYISIAKNKKNLMMVGDGINQTIITGDHNVVDNFTTFNSATFAVVAQGFVAVNITFRNTAGPSKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQTCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNATIKPAADLAPSVGIVKTYLGRPWKEYSRTVYMQSFMDSFINPSGWREWSGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYHVINATDAANFTVSNFLDGDNWLPQTGVPYISGLI* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1786 562 PANTHER PECTINESTERASE 16 560 - -
Gso19g1786 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 187 IPR035513 -
Gso19g1786 562 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 186 IPR006501 GO:0004857
Gso19g1786 562 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Gso19g1786 562 Pfam Plant invertase/pectin methylesterase inhibitor 36 182 IPR006501 GO:0004857
Gso19g1786 562 SUPERFAMILY Pectin lyase-like 246 560 IPR011050 -
Gso19g1786 562 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 16 560 - -
Gso19g1786 562 CDD PMEI-like_3 37 189 - -
Gso19g1786 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 187 IPR035513 -
Gso19g1786 562 Pfam Pectinesterase 249 547 IPR000070 GO:0030599|GO:0042545
Gso19g1786 562 SMART PMEI_2 30 184 IPR006501 GO:0004857
Gso19g1786 562 Gene3D - 247 562 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1786 Gso-Chr19 46617166 46619330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1786 24 562 Carbohydrate Esterase AT1G02810 61.348 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1786 K01051 - gmx:100813051 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1786 19 46617166 46619330 Gso3g1821 3 43864646 43866822 GST
Gso19g1786 19 46617166 46619330 Gso2g0142 2 1467870 1473044 PCT