Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1785 ATGGCTTTCAATAGCTTGTACTTTCGTATACTCTGTGTTTCCCTTGTGCTATCCTTCTTGACATCCATTTCCATAGCTGATAATAACCATGAAGCCGTTCCACCAGAAACCATATGCTACTCAACCTTAGACCCTTCTTACTGCAAATCTGTGCTTGCTAATCAAAATGGCAGCATATATGACTATTGCCGCATTTCTGTTCGAAAGTCATTGTCTCAGTCTCGTAAGTTCTTGAACAACATGTATTCATATCTTCAACATCCTTCTTCTTATTCTCAACCCACAATTCGTGCTCTTGAGGATTGTCAATTCCTTGCTGAATTAAACTTTGAATACTTATCAACAACACGTGGCACTGTTGATAAAGCCAGCGATGTTCTTCCCACCTCTCAAGCCAGCGATGTTCACACATTGCTTAGTGCTGTTTTGACAAATCAACAAACTTGTTTAGATGGCCTTCAAACTTCAGCTTCAGATTCAAGAGTGAAGAATGATCTTTCTTCCCAACTCTCGGAAAATGCAAAGCTTGACAGTGTCTCGCTTTATTTGTTCACCAAGGCCTGGGATTCTGAGAACAAAACTTCAACATCATGGCAGCACCAGAATGAACGTTTACCCTTGAAGATGCCAAACAAAGTACGTGCCATTTATGATTCCGCGAGAGGCCAGGGGAAAAAACTACTTCAAACAATGGATGATAATGAAAGCGTACTTGTGAGTGATATTGTGGTGGTTAGTAAGGATGGAAGCGGGAACTTTATCACTATCAATGATGCCATAGCTGCTGCACCAAATAACACAGCTGCCACCGATGGCTACTTCATTATTTTTATCGCCGAGGGTGTATATCAAGAGTACGTATCTATAGCCAAAAGCAAGAAGTTCTTGATGCTAATTGGAGATGGAATCAATCGGACAATCATCACTGGCGATCACAACGTTGTTGATGGCTTTACAACATTTAACTCAGCCACATTCGCTGTGGTAGCACAAGGATTTGTGGCAATGAACATAACATTCCGCAACACAGCTGGGCCAAGCAAGCACCAAGCAGTTGCAGTAAGAAATGGAGCGGATATGTCCACCTTCTACAGCTGTAGCTTTGAAGGGTATCAAGACACACTATACACGCATTCTCTGAGGCAGTTTTATCGCGAATGTGACATATATGGCACAGTTGACTTCATATTTGGAAATGCAGCTGTTGTTTTACAAAACTGCAACATGTATCCCCGCCTCCCCATGAGTGGACAATTCAATGCCATCACTGCACAAGGTCGAACTGATCCAAATCAAAACACTGGCATTTCCATACAAAATGCGACCATAAAAGCAGCACAGGATCTGGCTCCCGTGGTTGGTACTGTGGAAACATTCCTTGGGAGGCCATAG 1392 0.4253 MAFNSLYFRILCVSLVLSFLTSISIADNNHEAVPPETICYSTLDPSYCKSVLANQNGSIYDYCRISVRKSLSQSRKFLNNMYSYLQHPSSYSQPTIRALEDCQFLAELNFEYLSTTRGTVDKASDVLPTSQASDVHTLLSAVLTNQQTCLDGLQTSASDSRVKNDLSSQLSENAKLDSVSLYLFTKAWDSENKTSTSWQHQNERLPLKMPNKVRAIYDSARGQGKKLLQTMDDNESVLVSDIVVVSKDGSGNFITINDAIAAAPNNTAATDGYFIIFIAEGVYQEYVSIAKSKKFLMLIGDGINRTIITGDHNVVDGFTTFNSATFAVVAQGFVAMNITFRNTAGPSKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNMYPRLPMSGQFNAITAQGRTDPNQNTGISIQNATIKAAQDLAPVVGTVETFLGRP* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1785 463 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Gso19g1785 463 PANTHER PECTINESTERASE 14 463 - -
Gso19g1785 463 Pfam Plant invertase/pectin methylesterase inhibitor 36 174 IPR006501 GO:0004857
Gso19g1785 463 Gene3D - 237 463 IPR012334 -
Gso19g1785 463 SMART PMEI_2 30 183 IPR006501 GO:0004857
Gso19g1785 463 CDD PMEI-like_3 37 188 - -
Gso19g1785 463 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 174 IPR006501 GO:0004857
Gso19g1785 463 Pfam Pectinesterase 243 463 IPR000070 GO:0030599|GO:0042545
Gso19g1785 463 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 187 IPR035513 -
Gso19g1785 463 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 14 463 - -
Gso19g1785 463 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 186 IPR035513 -
Gso19g1785 463 SUPERFAMILY Pectin lyase-like 239 463 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1785 Gso-Chr19 46612673 46614708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1785 6 463 Carbohydrate Esterase AT4G02330 55.000 8.96e-175 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1785 K01051 - gmx:100792847 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1785 19 46612673 46614708 Gso3g1820 3 43860778 43862802 GST