Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1784 ATGGCTTCAAAGTTTTGTTTCTTCTTATTTCTCATTCTCTTGCCATTATTTGCTTCCTCAGACACTGTTCCAAATCCCACCACTCCTGTCTCTCCCGGAACCGCATGCAAATCGACTCCAGACCCATCCTTTTGCAAATCCGTTCTCCCTCCCCAAAACGGCAACGTTTACGACTATGGCCGGTTCTCCGTAAAAAAATCACTCTCACAAGCCCGCAAGTTCTTGAACCTAGTTGACAAATACCTCCAACGTAGTTCTTCTCTTTCCGCCACCGCAATCCGTGCACTTCAAGATTGCCGCACTCTCGGCGAACTCAACTTCGATTTTCTTTCTAGTTCCTTCCAAACAGTCAACAAGACAACGAGGTTTCTTCCTAGTTTTCAAGCCGACGACATCCAAACCTTACTCAGCGCCATTTTAACCAACCAGCAAACATGCTTGGACGGTCTCAAAGACACTGCTTCAGCTTGGAGCGTGAGAAACGGTCTCACTGTCCCACTCTCCAACGACACCAAACTATACAGTGTCTCTCTCGCTCTCTTCACCAAGGGTTGGGTTCCCAGAACCAAAGCCAAAGCAATGCACCCTACCAAGAAACAACTTGGGTTCAAAAATGGGCGTTTGCCGCTTAAGATGTCGAGCAGAACCCGTGCGATCTATGAGTCCGTGAGTCGGAGGAAGCTCCTTCAGGCCACAGTGGGCGACGAGGTTGTGGTGAGGGATATTGTGACGGTGAGTCAGGATGGAAGCGGAAACTTCACCACTATCAATGATGCCATTGCCGCAGCTCCTAACAAATCTGTCTCTACCGATGGATACTTCCTTATCTACGTCACTGCCGGTGTGTACGAGGAAAATGTGTCCGTTGATAAGAAGAAGACTTATTTGATGATGGTCGGGGACGGTATAAACAAGACAATTATCACAGGCAATCGTAGTGTCGTCGATGGCTGGACAACCTTCAGCTCCGCAACACTTGCTGTGGTTGGGCAAGGATTCGTGGGTGTGAATATGACCATCCGCAACACCGCCGGGGCCGTGAAGCACCAAGCAGTTGCACTTCGAAGTGGAGCAGATTTGTCCACGTTCTACAGCTGCAGCTTCGAGGGGTACCAAGACACATTATACGTACATTCCCTGAGACAATTCTACAGCGAATGCGACATCTATGGCACGGTCGATTTCATCTTCGGAAACGCCAAGGTTGTCTTCCAAAACTGCAAAATGTACCCACGTCTCCCCATGAGTGGTCAATTCAACGCCATCACCGCACAAGGAAGAACAGACCCAAACCAAGACACAGGTATTTCAATCCATAATTGTACCATAAGAGCAGCTGATGATTTAGCTGCTAGCAACGGTGTTGCAACGTATTTGGGAAGGCCGTGGAAGGAGTATTCTAGAACGGTTTATATGCAAACTGTTATGGACAGTGTGATCCACGCTAAGGGGTGGCGTGAATGGGACGGTGATTTTGCATTAAGCACTTTGTATTACGCAGAGTACAGCAACAGTGGGCCAGGGTCTGGAACCGATAATAGAGTGACGTGGCCCGGTTATCATGTGATTAATGCCACGGATGCAGCTAACTTTACTGTGTCCAATTTTTTGCTTGGTGATGATTGGTTACCGCAGACAGGAGTGAGTTACACCAATAACTTGATATAG 1668 0.4814 MASKFCFFLFLILLPLFASSDTVPNPTTPVSPGTACKSTPDPSFCKSVLPPQNGNVYDYGRFSVKKSLSQARKFLNLVDKYLQRSSSLSATAIRALQDCRTLGELNFDFLSSSFQTVNKTTRFLPSFQADDIQTLLSAILTNQQTCLDGLKDTASAWSVRNGLTVPLSNDTKLYSVSLALFTKGWVPRTKAKAMHPTKKQLGFKNGRLPLKMSSRTRAIYESVSRRKLLQATVGDEVVVRDIVTVSQDGSGNFTTINDAIAAAPNKSVSTDGYFLIYVTAGVYEENVSVDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFSSATLAVVGQGFVGVNMTIRNTAGAVKHQAVALRSGADLSTFYSCSFEGYQDTLYVHSLRQFYSECDIYGTVDFIFGNAKVVFQNCKMYPRLPMSGQFNAITAQGRTDPNQDTGISIHNCTIRAADDLAASNGVATYLGRPWKEYSRTVYMQTVMDSVIHAKGWREWDGDFALSTLYYAEYSNSGPGSGTDNRVTWPGYHVINATDAANFTVSNFLLGDDWLPQTGVSYTNNLI* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1784 555 Pfam Pectinesterase 243 540 IPR000070 GO:0030599|GO:0042545
Gso19g1784 555 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Gso19g1784 555 Pfam Plant invertase/pectin methylesterase inhibitor 34 180 IPR006501 GO:0004857
Gso19g1784 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 183 IPR035513 -
Gso19g1784 555 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 182 IPR006501 GO:0004857
Gso19g1784 555 SMART PMEI_2 27 180 IPR006501 GO:0004857
Gso19g1784 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 183 IPR035513 -
Gso19g1784 555 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 11 553 - -
Gso19g1784 555 SUPERFAMILY Pectin lyase-like 239 551 IPR011050 -
Gso19g1784 555 Gene3D - 237 554 IPR012334 -
Gso19g1784 555 PANTHER PECTINESTERASE 11 553 - -
Gso19g1784 555 CDD PMEI-like_3 34 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1784 Gso-Chr19 46604033 46606408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1784 5 555 Carbohydrate Esterase AT4G02330 64.148 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1784 K01051 - gmx:100800971 1106.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1784 19 46604033 46606408 Gso3g1819 3 43852155 43854645 GST