Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1782 ATGGAGACAGGCAAAAAACCTGCAATACCAGAAAATTTAGTGGTCTTATGCAATGGCTTGAAAGGAATCTATGTTCCAAAGGATCATATGATTATCTGCAAGTGTTGCTTGTGTGGTTCAAGGACGCATACACTTACCGAATGGGAAAGACATGCAGGTTCCAAAGCCAGAAAATGGAGATATAGTGTGAAAGTAGAAAGCACAATGCAACCGCTCAAAGAATGGATCGATGAACACAATTCCGGAGCTGGAACTTCTCTGCAGTTAGATCAGCAGCAAATACTCTCCTTTTTGCAAGAGAAATATGAGCCAGTTTATGCAAACTGGATAACAGAAAGATGTGCCATTTGCAGATGGGTTGAAGATTGGGAAGATAACAAAATTATCATCTGTAACAGGTGCCAAATTGCTGTCCACCAAGAATGCTACGGGGCAAAGAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGTCTGTGAAAATCCTGATGTTGAGAGAGAGTGTTGCCTTTGCCCAGTAAAAGGTGGGGCTCTGAAGCCAACAGATGTTGAGATGTTGTGGGTTCATGTCACGTGCGCTTGGTTTCGGCCTGAAGTTATTTTCCAAAATGACAAGGCAATGGAACCAGCCTCTGGAATCCTCAAGATTCCTCCTAATTCCTTTTCAAAGACTTGCGTGATCTGTAAACAAAGCCACGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACATATTTTCATGTAATGTGCGCGTCAAGAAAGGGATATAGCATGGAATTGCATTCGACAGAAAAGAATGGGACTCTAATAACGAATAAGCTAATATATTGTGCAATGCACAGGGTCCCAAACCCAGAATCAGGTCTGGTTGTACATACACCCAATGAGGTATTCTCATCGACAACTTCACTTCAAAATCATCCGGGGAGCATCAGGAGATCAAGGCTGGTTTCATCAGAGATTGTAGTACTTCCCGAATCTGCAAACTCTGAAATTAATGAGATTGAACCACTGTCTGCAGCAAGATGTCGTGTGTTCATAAGGCCTTCCCGTAAGAAGGATGGAGTGCCAATAATTCACTTGCTTGGGGGGCCAAACCTTCACTCTTTAAGTGCAATAACTCAATTGAACAGCAATAAGGATGCTCAAGTATTTTCTTCTCTTAAGGAGCGTCTTCACCATTTACAGAAAACAGAGAACCAAAAAGTTTGCTTAGGGAAATCAGGTATTCATGGATGGGGCCTCTTTGCTCGTAGAGATCTGGAAGAAGGAGAAATGGTTGTTGAATATCGTGGCGAGCAGTTACGGCGTAGTATTACTGACCTAAGGGAAGCACAGTATCGTTCAGAAGGCAAAGATTGTTATTTCTTTAAGATTAATGAGGAAGTGGTGATTGACGCAACGGATAAGGGGAATATTGCACGTTTAATAAACCATTCTTGCATGCCTAACTGCTTTGCAAGGATTGTGCCTTCGGGTGATCAGAAGAACCGGATTGTTCTTATTGCCAAGACCAATGTTTCAGCTGGTGAAGAACTAACGTATAATTATTCGTTCGACGATGAGCGGGATGAAGAAAAGGTTCCCTGTCGCTGTAAAGCCCCTAACTGTAGCGGATTTATGAACTAG 1626 0.425 METGKKPAIPENLVVLCNGLKGIYVPKDHMIICKCCLCGSRTHTLTEWERHAGSKARKWRYSVKVESTMQPLKEWIDEHNSGAGTSLQLDQQQILSFLQEKYEPVYANWITERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCENPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVIFQNDKAMEPASGILKIPPNSFSKTCVICKQSHGSCTSCCKCATYFHVMCASRKGYSMELHSTEKNGTLITNKLIYCAMHRVPNPESGLVVHTPNEVFSSTTSLQNHPGSIRRSRLVSSEIVVLPESANSEINEIEPLSAARCRVFIRPSRKKDGVPIIHLLGGPNLHSLSAITQLNSNKDAQVFSSLKERLHHLQKTENQKVCLGKSGIHGWGLFARRDLEEGEMVVEYRGEQLRRSITDLREAQYRSEGKDCYFFKINEEVVIDATDKGNIARLINHSCMPNCFARIVPSGDQKNRIVLIAKTNVSAGEELTYNYSFDDERDEEKVPCRCKAPNCSGFMN* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1782 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 163 IPR013083 -
Gso19g1782 541 CDD SET_SETD1-like 389 536 - -
Gso19g1782 541 CDD PHD_ATX3_4_5_like 113 159 IPR042011 -
Gso19g1782 541 Pfam PHD-zinc-finger like domain 167 279 - -
Gso19g1782 541 SMART PostSET_3 525 541 IPR003616 -
Gso19g1782 541 Gene3D SET domain 373 541 IPR046341 -
Gso19g1782 541 ProSiteProfiles Zinc finger PHD-type profile. 111 162 IPR019787 -
Gso19g1782 541 ProSiteProfiles Post-SET domain profile. 525 541 IPR003616 -
Gso19g1782 541 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX3 3 541 - -
Gso19g1782 541 SMART PHD_3 113 160 IPR001965 -
Gso19g1782 541 SMART PHD_3 224 280 IPR001965 -
Gso19g1782 541 SMART set_7 400 523 IPR001214 GO:0005515
Gso19g1782 541 ProSiteProfiles SET domain profile. 400 517 IPR001214 GO:0005515
Gso19g1782 541 ProSitePatterns Zinc finger PHD-type signature. 114 159 IPR019786 -
Gso19g1782 541 Pfam PHD-finger 126 160 - -
Gso19g1782 541 ProSiteProfiles Extended PHD (ePHD) domain profile. 165 280 IPR034732 -
Gso19g1782 541 PANTHER PHD FINGER PROTEINS 3 541 - -
Gso19g1782 541 Pfam SET domain 411 516 IPR001214 GO:0005515
Gso19g1782 541 SUPERFAMILY SET domain 394 538 IPR046341 -
Gso19g1782 541 SUPERFAMILY FYVE/PHD zinc finger 112 176 IPR011011 -
Gso19g1782 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 281 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1782 Gso-Chr19 46595324 46600372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1782 46 279 C2H2 Transcription Factor Family AT3G14740 28.455 9.94e-22 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso19g1782 zf-HC5HC2H_2 1.7e-29 CL0390