Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1780 ATGACTACGGAACCAGACGTTGAATCCAAGTATGCCCACAACGGCAAGGTCATGGTGGGCACCGCCATTCTCCTCTTCATTCTCATAATAATCATTATTTTCTTCCACACCTACGTCCGCTTCTGCCGCCGTCGCCGCCGCTTCTCTCATTCGCTTCCGACCAATTCCTCCGCCGCCGCCTCTCTCGACGACCCGTGCCTCGACCCTTCCATCATCAAGTCCCTTCCCACTTTTACTTTCTCCGCCGCCACCCACCGCTCTCTCCAGGACTGCGCCGTGTGCTTATCGGAGTTCTCCGACGGCGACGAGGGCCGCGTGCTCCCGAATTGTAAGCACTCTTTCCACGCTCATTGCATCGACACGTGGATCGGGTCGCACTCCACGTGTCCTCTCTGCCGAACCCCGGTCAAACCGGTCACGGGTTCTTCCGACACTGAACCGGGTTCGGTTTCGGTTTCCGAAGCGGGTGAGGGTTGCTCCTCTTCGTCTTTGCCTCCGCCAATTGGGTGCCCGAGAAAGCCGTTGGGTATAAATATAATCGTAGAGATTCCAGAGGTGGAAAGAGGGTCGGATTCTGTAACCGGAGATCAAGGGTTCAGATGGTCATTGAAGAGGTTTTGCAATGTTTAA 630 0.5556 MTTEPDVESKYAHNGKVMVGTAILLFILIIIIIFFHTYVRFCRRRRRFSHSLPTNSSAAASLDDPCLDPSIIKSLPTFTFSAATHRSLQDCAVCLSEFSDGDEGRVLPNCKHSFHAHCIDTWIGSHSTCPLCRTPVKPVTGSSDTEPGSVSVSEAGEGCSSSSLPPPIGCPRKPLGINIIVEIPEVERGSDSVTGDQGFRWSLKRFCNV* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1780 209 PANTHER RING-H2 FINGER PROTEIN ATL64 8 155 - -
Gso19g1780 209 SUPERFAMILY RING/U-box 71 141 - -
Gso19g1780 209 CDD RING-H2_PA-TM-RING 90 133 - -
Gso19g1780 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 141 IPR013083 -
Gso19g1780 209 MobiDBLite consensus disorder prediction 139 167 - -
Gso19g1780 209 Pfam Ring finger domain 90 133 IPR001841 -
Gso19g1780 209 MobiDBLite consensus disorder prediction 139 160 - -
Gso19g1780 209 SMART ring_2 91 132 IPR001841 -
Gso19g1780 209 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 155 - -
Gso19g1780 209 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1780 Gso-Chr19 46584521 46585774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1780 11 145 Rapid Response to Elicitors AT3G16720 44.000 1.32e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1780 - - gmx:100800433 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1780 19 46584521 46585774 Gso3g1816 3 43836573 43837677 GST