Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1771 ATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAATCTACCCGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTCTGAAGTACGGACACATAACACACATCGACCTAAAGGTTCCCCCAAGACCACCTGGTTATGCATTTGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGTCGTGATGGCTATGATTTTGATGGCCACCGGTTACGGGTGGAGCCTGCCCATGGTGGGCGTGGTCATTCATCCTCAAAAGATCGGCACAATAGTCACAGCAATGGCCGAGGTGGACGTGGGGTATCTAGGCGCTCTGAATATCGTGTTCTAGTCACTGGATTGCCCTCTTCGGCATCCTGGCAGGATCTTAAGGATCACATGCGCAAGGCAGGGGATGTTTGCTTTTCTCAAGTTTTTCATGATGGAAGGGGTACTACCGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATTAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAAGGGATATGTTCGGGTGAGGGAATATGATTCAAGGCGGGATTCTTCTAGAAGTCCTAGTCATGGCCCATCTCATTCTAGAGGAAGGAGCTATAGCCGCAGTCGTAGCCGTAGCCATAGTTACAGTCGGGACCGGAGCCAAAGCAAATCTCCAAAAGGAAAGTCTTCACAGCGTTCACCTGCTAAATCTCCAAAAGGAAAGTCTTCACAGCGTTCACCTGCTAAATCTCCATCAAGATCTCCCTCTCGTTCTCGCTCAAGGTCAAGGTCCCGTTCGTTATCAGGATCACGGTCCAGGTCCAGGTCTCCATTGCCTCCGCGTAATAAAAGCCCCAAAAAACGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCAGGAGCAAGAGTAAGCTCTGA 930 0.4839 MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSKDRHNSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSHGPSHSRGRSYSRSRSRSHSYSRDRSQSKSPKGKSSQRSPAKSPKGKSSQRSPAKSPSRSPSRSRSRSRSRSLSGSRSRSRSPLPPRNKSPKKRSASRSPSRSRSRSKSKL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1771 309 MobiDBLite consensus disorder prediction 230 259 - -
Gso19g1771 309 SMART rrm1_1 112 185 IPR000504 GO:0003723
Gso19g1771 309 SMART rrm1_1 8 78 IPR000504 GO:0003723
Gso19g1771 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Gso19g1771 309 MobiDBLite consensus disorder prediction 73 107 - -
Gso19g1771 309 MobiDBLite consensus disorder prediction 284 309 - -
Gso19g1771 309 MobiDBLite consensus disorder prediction 73 110 - -
Gso19g1771 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Gso19g1771 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Gso19g1771 309 MobiDBLite consensus disorder prediction 215 229 - -
Gso19g1771 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Gso19g1771 309 Gene3D - 111 188 IPR012677 -
Gso19g1771 309 Gene3D - 2 110 IPR012677 -
Gso19g1771 309 CDD RRM2_SF2_plant_like 111 186 - -
Gso19g1771 309 SUPERFAMILY RNA-binding domain, RBD 5 175 IPR035979 GO:0003676
Gso19g1771 309 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 286 - -
Gso19g1771 309 CDD RRM1_SF2_plant_like 8 78 - -
Gso19g1771 309 MobiDBLite consensus disorder prediction 186 309 - -
Gso19g1771 309 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1771 Gso-Chr19 46520192 46526049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1771 3 173 Eukaryotic Initiation Factors Gene Family AT4G34110 23.295 3.78e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1771 K12890 - gmx:100796900 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1771 19 46520192 46526049 Gso3g1806 3 43760440 43766217 GST